Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578164 and SGN-U590566 in the current build, Tomato 200607 #2

Unigene SGN-U314370

Unigene Basic Information

Unigene ID:	SGN-U314370
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314370
mRNA sequence:	Length: 2206 bp

>SGN-U314370 Tomato 200607 #1 (78 members)
ACTTATGGATCATCGGCACCCTTCACCTTCTCTTTCTCAATTTGTTCCTTTATCCAGAAATACGTAATCCTCAACCCATCCTTCAACTTC
ATATTAGGAGCCCAGCCAAGCTTTTCCTTGATGAGAGTGTTGTCAGAGTTTCGACCACGCACACCCTCTGGTCCTGGAATGTGATGGATC
GGAAGGTTCTTGCCATCAAAGCTGAGGACTATCTCTGCCATCTCATTCATGCTTACCATCTCATCACTTCCGATGTTCACAGGCTCTCTG
AAGTCGGATTTTGTTAACCTCAGGACACCTTTTTTTGGGTTTTTCACAGCCGTGGGAGTAATTACATTTTTGACCTTCCAAACTCCAAAA
TCATCAACAATTCAATGGCCGTCTCTAGTTACGCTAGGGCATTTCCGTCATTCGAATGTCGTTCGGAGCCTGATTTCTCCGGCAGCCTTC
CACATCCTAAAGCCGGCGTTCGGTTCTCCGGCAAGTATAACTCCGGGAGTAACCGATCTCAGGTTTATGGACTGTCTTCTTTGATCTATA
GGTTTCCGCCTAATTTCGTGAGGCAGCTAAGCATTAAGGCTAGGAGGAATTGCAGCAACATCGGCGTGGCTCAAGTTGTGGCGGCTTCCT
GGTCTAACAACCAAGCCGGTCCTGAGTTCACTCCGGCGGCTAATGCTGTCGATTCATCCGCTTCCGCTGCTGTTACTTCGATTGGTATCA
CCACAGGTGACGAGGAGGTGGCGGTTGTGGAAAATGCGGATTGTAGTGATCAAAATGTACAGATTAAGGGTTCGACAGGTGTTAAATATG
CTTCATTTTTGAATTCAGATGGAAGCGTTGCTATTCATGCCGGTGAAAGGTTGGGACGCGGTATTGTTACTGATGCCATAACTACCCCAG
TGGTTAACACATCTGCTTACTTCTTCAACAAAACTTCTGACCTTATTGATTTTAAGGAGAAAAGACGTGCAAGTTTTGAATATGGCCGCT
ATGGGAACCCCACTACTGTTGTTTTGGAGGAGAAAATTAGTGCACTTGAGGGTGCTGAATCAACCTTGATAGTGGCATCTGGAATGTGTG
CTAGTACTGTCATGTTCCTGGCCTTGGTTCCTGCTGGTGGGCATATTGTTACTACTACAGACTGCTACAGGAAGACACGTGTTTTTATTG
AGACAATATTACCTAAAATGGGAATTACGGCCACAGTTATTGATCCAGCAGATATGGGAGCTTTGGAGTTAGCATTAAATCAGAAGAAAG
TGGATCTTTTCTTTACTGAGTCTCCAACAAATCCATTCCTGAGATGTGTTGACATTGAGCTGGTTTCAAAGCTTTGCCGTGAAAAAGGAG
CCTTGGTTTGCATAGATGGAACATTTGCAACTCCTCTTAACCAGAAGGCCCTTGCTCTAGGGGCTGACCTTGTTGTGCACTCTGCTACAA
AATTCCTTGGTGGGCACAACGATGTTCTTGCAGGTTGTATTAGTGGTCCTGAAAAATTAGTTTCAGTAATCCGAAACTTGCATCATATCC
TGGGTGGTGCTCTCAATCCTAATGCTGCATATCTTATCATCCGAGGCATGAAGACGCTGCATCTTCGTGTACAGCAACAAAATTCTACTG
CATTGAGGATGGCCGAAATTTTAGAGGCTCATCCCAAGGTGAAACACGTCTATTATCCAGGCTTGCCGAGTCATCCGGAATATCACCTTG
CAAAGAAACAAATGACTGGCTTTGGTGGTGTGGTCAGTTTTGAGGTTGATGGAGACCTCCTAACTACTGCAAAATTTGTGGATGCTCTGA
GGATTCCTTATATTGCTCCATCGTTTGGAGGTTGTGAGAGCATTGTGGACCAACCAGCAATAATGTCTTATTGGGATCTTAGCCAGTCTG
ATAGAGCAAAGTATGGCATCTTGGATAACTTGGTCCGATTTAGCTTTGGAGTGGAAGATTTTGAAGATGTGAAAGCTGATGTTCTTCAGG
CTTTGGATTCCATTTAGGCTGCTGTTTCACCTGCAACGATTTTTTTCCTTTTCCTTTTCATCCTGATTTCGTTGTTCGTACTTGTGTTAT
TGCTGACTTCCATCTCGTATCCAATTGTTTGAACCTAATTAAAGGATCGTCTAGTAGATGATTCAGTCCATTAAATTATTTCAAAAAAAA
AAAAAAAAAAAAAATGAATATTCCTCTCAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY508112	cystathionine gamma synthase

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	13
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (78)

Alignment image suppressed for unigene with 78 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101789	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	37
2	118834	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	28
5	129661	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	17

Preceding Unigenes (1)

Unigene	Build
SGN-U213411	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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