Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579010 in the current build, Tomato 200607 #2

Unigene SGN-U314576

Unigene Basic Information

Unigene ID:	SGN-U314576
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314576
mRNA sequence:	Length: 875 bp

>SGN-U314576 Tomato 200607 #1 (48 members)
CTGAAGACGCCTCCCAATTATTCAGACGCAAAGCAAAGCAGAAATGGTGACCTACAAATTCCATCAATATCAGGTTGTAGGGAGAGCTCT
ACCGTCTGAAAACGATGAGCATCCAAAGATTTACCGTATGAAACTCTGGGCTACGAATGAGGTCCGTGCTAAGTCCAAGTTTTGGTACTT
CTTGAGGAAGCTAAAGAAGGTGAAGAAGAGCAATGGTCAGATGCTAGCTATTAATGAGATTTTTGAGAAATACCCAACAAAAATCAAGAA
CTATGGTATTTGGCTGCGTTACCAAAGTAGGACTGGGTATCATAACATGTACAAGGAGTACCGTGATACAACATTGAATGGTGGTGTAGA
ACAGATGTACACTGAAATGGCTTCTCGCCACAGGGTCCGTCATCACTGCATCCAGATCATCAAGACGGCCACTATTCCAGCTAAGCTCTG
CAAGCGGGAGAGCACAAAGCAGTTCCACGACTCCAAAATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCTTCCAGGAAACTCAA
GACTACCTACAAGGCCACCAAACCTAACTTGTTTATGTAAAACGTGCTTTAATCATTGAGTGGATTGAGTCACTATTTCAAATTACTTCA
ATTTTGGTGCTCTGGACTAGTGGATTCTAACATCCACTGGCAAGGGGAAGAAAAAGACACTTCTGTTGTGATCATTCGATTATCTTTTGC
ACTTTTTATAGAACTAGATATCAGACCATTATGTTCAATTTTGAGTTTGGTATTTTGCTTGCTCTGACAGTTGCAATCTTAGTTATATGT
CTCATTATTTGGTTTATATAATTTTCTTATTTGGTTGTCTAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (48)

Alignment image suppressed for unigene with 48 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101928	Ribosomal L18ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
2	118829	Ribosomal L18ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129283	Ribosomal L18ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	27

Preceding Unigenes (1)

Unigene	Build
SGN-U213175	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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