Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580180 in the current build, Tomato 200607 #2

Unigene SGN-U314671

Unigene Basic Information

Unigene ID:	SGN-U314671
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314671
mRNA sequence:	Length: 2039 bp

>SGN-U314671 Tomato 200607 #1 (17 members)
TTTTTAGGAAAATAGAAAGAAAAAGAGGTTCACAGTTTTTGTACAGCCTCATCCATCTTCTCGTCTCTTCTCTTCTCTTCTCACCTATCA
CCAAATCGCTTCCTCAATATTCCGAGACCCTTTTGCTTAGCCTTCTTAATCGGATTCTCCTCATCTTTTTTTTTCTTACATACCCCCCCT
TTTCTTTTTTCATCAACAAAGATCAACGCAAGATTACCGTTTTTCTTTTTTCTTCTTTTCTTCTTTTTGCTAGGAGTAAACCAAGTTGTT
GTAGCTTGTGTTTGACAGTAAATTATGGGATTGAATGGTGTGGATCTTACGGATGACGGCGACGGAGGAGGAGGAGATGTTGGTGGAGGA
GAAGATAAGGCATCGGTGGTTTCGTGTTCGATTTGTCTTGAAGCTGTAACCGACAATGGGGATAGATCCTGGTCGAAGCTTCAATGTGGA
CATCAATTTCATCTTGATTGCATTGGTTCTGCCTTTAACATCAAGGGGCAAATGCAGTGTCCCAACTGTCGGAAAATTGAGAAGGGTCAA
TGGCTATATGCAAGTGGTTGCCGTCCCCTACCAGATTTCAACATGGAAGATTGGGCCCATGATGAAGACCTATATGATCTGAGCTACACT
GAAATGTCATTTGGAGTTCACTGGTGTCCGTTTAGTGGATTGACTCGACTACCAGCATCTTTTGACGAAGGGGAGCTTTCATCTAGTGCA
TATCATGATCTTCTTGGTCAGCATGCTATATTTGCTGATCACACAGCTGTATCATCTGCTGCTCATCCATGCCCGTATATTGCCTATGTT
GGAATTCACCCATCATCCTCAAATTCGAGTGGAAGTATCAATGATGGTCCTAATTTCAACAATCACTGGACTAGTCCATCTGTTCCCAAC
GAGATACCTGCTTCTTATGCTTTCCCAGGAATGGATGTGCATTATCATAGTTGGGATCATCATTCTTCTTTCCCTATGGCAAGCAGTCGT
GTTGGTACTGCTGATCAGTCCTCGGTTCCCTCTGTTACTCAGAGAGTTGCCAGGACCAATGCTGATATCCCAAGACCAGGATCTTTTGTC
CCTCCATTCCTTGTTGGTCACGGTTCTGCTGCCAGAGCTGGAAGTTCAGTTGCTTCACCAATGATACCTCCTTATCCTGGAAGTGTAGCT
CGGGCTCGTGACCGTGTTCAAGCTCTTCAAGCCTATTTTCAGCAACCAAGTAATTCACCAGCTGTACGCACTCCTGTTATGTCTGCTACT
CGACGATCCAACAATCACAGAGGGTTGGCTCAAGTGGGGCCGGCTGCCTCATCATCTGATCAGGCTGGTGGCTTCTACTTCTATCCTTCA
AGTTCTTCAGGAAGAAATTTCCAAGAAGCAGAAAATCCAGTATCAAACAGATATCACGCTTGGGAACGAGAACACTTGCCCGCCTTCCCC
TTGAGTCAGGTTGACAGAGATCCTATTTGGGGGCCATTTCATCACACAGGTGTTGGATCTGATAGTGGTAGCCGAGCTGGCAGCTTCCGA
CCGAGACATGGGTCTGAGAGGATGCCGTCCCAGAACCGGTCATGAACTTCTGTGCTGTTTTGATGAGAACTGTGATTACTTTGAATGAAC
CCAATTTATGTATGTTTTGAGAAAACGATCTAAAATGGTTGGAGTCTTGTCAATTTGGCAGGTTCAAAACTGTTTCGTGGCCATGAAAAG
TGATCCCTTTCTGATGGCCATGAGTTGTGTGATGGGACCGTGGCGCTCTCTTGTTTCTGTGCTGTGGGGTATAAATAACATCACAATGTT
AATGGCAAAGTTCAAGCTAGTGATTTGCCTCTTTATCTGCAGTGCTTGGTTACCCATATTTCTGTCATATTAGTAAATGGTTTGAACATT
GATGAACCTGTTGAATGTAGTTTTGGTCAACAGAACCTGTTGTTCAGATTGGTTCTACGGTTGAAGCAACCACTGCATCCTTTATGGGTG
ACAAAGAATTAAAGCTATTAGACTGTTTTAAGTATCCTATATTAGTGATAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102591	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	12
2	120418	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	9
5	131914	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	6

Preceding Unigenes (2)

Unigene	Build
SGN-U213908	Lycopersicon Combined #3
SGN-U228196	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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