Sol Genomics Network

Notice: The contact form functionality has been restored. Apologies for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580380 in the current build, Tomato 200607 #2

Unigene SGN-U314689

Unigene Basic Information

Unigene ID:	SGN-U314689
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314689
mRNA sequence:	Length: 1563 bp

>SGN-U314689 Tomato 200607 #1 (36 members)
TGGCGGCCAAATCGGCCGAATTGGTATAATCTTATTACCGAAGCAAAAGAAAATGAAAACGCGTACACGTTCTACATAATCATCATCTAT
AAATTATTATAATTCCAATAACTGTGTATCTCTTAAGACAAAATTCACTCAAAATTCAACTACTCAAAGCAATTTACAATCAATTTCTCG
AATCATGACAGGCACAGGAGACGAAAATCAACCCAAATTTAAAAAATCAGAGTCTCAAATACCTTCTGTTTCTTCATCATCTTCAGATCC
ACAAGCACCAGAAATGGATCCCCAAAAATGGGGTACCCATATTATGGGTCCGCCTGCAGTTCCAACTTGTCATCCAGACAATCAGAAAGC
TGCTTCATGGAGAGCTGAGGATCAAAGAGAAGAGTTTCAGCCACAGCCTTATGTTGTTTATTCCCCAATTGATAAGCCTAGCAATAACCC
ACTTGATTCCGTTGTTAATGTGTTCAATTCATGGAGTAACAGAGCTGAGAACATAGCTCGCAACATTTGGTATAATCTGAAAGCTGGACC
GTCAGTTACAGAAGCGGCATGGGGAAAACTTAATTTGACAGCTAAGGCGTTGACAGAGGGTGGATTTGAGCCTCTTTACAAGCAGATTTT
TGGAGCAGATCCTAATGAACAGCTGAAAAAGACGTTTGCTTGTTATCTTTCTACTGCGACTGGGCCTGTTGCTGGTACACTCTATCTGTC
AACTACTAAAGTTGCTTTTTGCAGCGATCGGCCATTATCATACAAAGCTCCATCTGGTCAGGAGGCCTGGAGCTACTACAAGGTAGCAGT
ACCGTTGGGAAATATTGGGACTATAAACCCAATAGTGATGAAAGAGTCTCCACCAGAGAGGTACATTCAGATTGTTACCATCGATGGTCA
TGATTTCTGGTTCATGGGGTTTGTGAATTTTGATAAAGCAAAACATCATCTACTTGAAACTTTGTCAATTTTTAGAGCACAACCCCCTCA
TCTCAATCTGCAACAACCAGCAGCTACTTACTAGAAGCATTGCCTGTACTCTGTTTTAGTGTGTTTTTTTTCCTGTTTGTTCCTGCATTA
GATATGTATTTGTATTTCTTTTATTGTAACATTACTTGTATGTTTATACATATTCGGGAGTGACTATGTTCGTTTTGATGTAAATAAAAG
TTCTTTGCGTTTTAATTTATTTGTCTTGTTTTGACTTGATATAGAAGATTTTGAGATTTGAAGGTAAAAAAAAAGTTTGGGTGCACTGAT
GCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAA
GTGCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATT
TAGGGGAAGCTTGTTTGAATCCTCCTTAAAGTTTTTCTCTGGAGAAACTGTAGTAATTTTACTTTGTTGTGTTCCCTTCATCTTTTGAAT
TAATGGCATTTGTTTTAATACTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118746	GRAM	32
5	131511	GRAM	7

Preceding Unigenes (2)

Unigene	Build
SGN-U225517	Lycopersicon Combined #3
SGN-U225518	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer