Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577731, SGN-U578517, and SGN-U578557 in the current build, Tomato 200607 #2

Unigene SGN-U314699

Unigene Basic Information

Unigene ID:	SGN-U314699
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314699
mRNA sequence:	Length: 1504 bp

>SGN-U314699 Tomato 200607 #1 (35 members)
GAGGCTATACGGTCTCATAAGCCGGTGAACCGACTAGTGTAAGCGGAGCATTTCAGTTGCTGCCAATCGCCTTGTGGTTTTTTCGCATCT
GGACTCCAATGGCCGCTATATTAGCTCGCAAGTCTCTATCTGCTCTTCGTTCTCGTCAGCTTGTTTTAGCAGGACAAGCATGGCAAGGGA
CTAATACACCTAATGGAACTCTGCTTGGTACTCGATCATTTGCTACCAAACATTCATTTTCAACTGACAAAGATGATGAGGAAAGAGAGC
AGCTAGCAAAGGAGCTATCAAAAGATTGGAATTCAGTCTTTGAGCGAAGCATAAATACTCTCTTTTTGACTGAAATGGTTCGAGGTCTGA
TGCTGACGCTCAAGTACTTCTTTGAAAAGAAAGTGACTATTAACTATCCATTTGAAAAGGGTCCTTTAAGCCCTCGTTTTCGTGGAGAAC
ATGCCCTTCGACGTTATGCCACAGGAGAGGAAAGATGCATTGCATGTAAACTTTGTGAAGCTATTTGCCCTGCTCAAGCTATCACAATCG
AGGCTGAGGAGCGAGAAGATGGCAGTCGTCGAACAACTAGGTATGATATCGATATGACAAAGTGCATCTACTGTGGATTCTGCCAAGAAG
CCTGCCCTGTTGATGCCATTGTTGAGGGGCCCAACTTTGAGTTTGCAACTGAAACTCATGAGGAACTTCTTTATGACAAGGAGAAGCTTC
TTGAGAATGGAGATAGATGGGAAACTGAGATTGCAGAGAATCTGAGATCTGAAAGCCTCTATCGCTGAGTTCGTTCTTTGAATATAAGCG
GGTCTTTATTATAAAATAATCCACAAAATAAAGAGACGTGGTGAATGCTCTTATTTGCATTTTCCCTTGTTTTTTGATTGATGAGATGGC
TCTATTTCGTACAGATCTGTGAATGAAATAGAGCAGAATCTTGAACTAGATTTCTGGTACAGCAAGCTGACTTATCTGTAATGTAACCAT
GGTCATAGACTCTAGTGGCTATGTCACTGCAATTACTCCTTTCGTGCCAATGGTGTCTTTATGGAAAAGTTATATGGAACCATGATAACC
CAATTTGGATCTGGATGATCCATTGCTAGTTGTAGAAGAGATTGAATTTTGTTCATTTTCTTGTGCTCTGCCATTTATTATTGCCAAAAG
TCGAACACCAAAGAGGCACTGACTTGGAAGAAGCAATATGGCTTCCTCTGTCATTTCTTCAGCAGCTGTTGCCACACGCAGCAATGTTAC
ACAAGCTAGCATGGTTGCACCTTTCACTGGTCTCAAATCTTCAGCCACTTTCCCTGTTACAAAGAAGCAAAACCTTGACATCACTTCCAT
TGCTAGCAATGGTGGAAGAGTTAGCTGCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTACGAGACACTCTCATACCTTCCTGATTT
GTCTGACGAGCAATTGCTTAGTGAAATTGAGTACCTTTTGAAAAATGGATGGGTTCCTTGCTTG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ss5	Tomato RuBP carboxylase small subunit

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	119919	4Fe-4S ferredoxin iron-sulfur binding - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) NADH-quinone oxidoreductase chain I - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity acting on NADH or NADPH (GO:0016651)	11
5	130372	4Fe-4S ferredoxin iron-sulfur binding - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) Alpha-helical ferredoxin NADH-quinone oxidoreductase chain I - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity acting on NADH or NADPH (GO:0016651)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U225510	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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