Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577904, SGN-U578438, SGN-U579638, SGN-U580797, SGN-U580869, SGN-U580983, SGN-U590550, SGN-U590702, SGN-U591361, SGN-U593051, and SGN-U593165 in the current build, Tomato 200607 #2

Unigene SGN-U314706

Unigene Basic Information

Unigene ID:	SGN-U314706
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314706
mRNA sequence:	Length: 2721 bp

>SGN-U314706 Tomato 200607 #1 (1087 members)
GGGGGAAATGGGGTCCCGGCCCCCCCCCCAAGTTTTTTTTTTTTTTTGAAGAACAAATAATTCTTTTTCACTATAAACATACAGAGATGA
TGAAACACAAGTAACCATAAAGCAATTTTTTTTTTTTTTTTTTTTTGGTGTAATGGTAGATTTATTTTTATTTTAGACGAATAATTTTTA
CAGCAACCAGGTAATGAGAAGTATCATAAAAGCAAGATGTACACTAGATTTCTACAGCATAGGAAAATAAAACTTCGGCACGTTTGTACC
TCATGGCTGTTTAGCCAAAATCTTGGAGGGCAACCAAGTTATAACGCGTTCCTTTAAATGACGATTCCACTTGGAATCAAAGCATCCTTG
ATGACAGTGACAATCCCACTCTTGATGAAGTATCCATCTGTTTCCCTAGCCGCTTCTTGAACATTGTCTTTGTTAATGATCTTCACATTG
TCCCCTATACGAGCATTCTTGTCGATAATGGCTCTTTTGATGTGACAATTCTTGCCGATGCCAATTGGGACACTGCCCTTTGCAGCCAGC
AGCTTCCTGTCAGCATCAGTCTCGTAGTAATCTGCCCCCATCAAAAGTGAGTCTTCTATAATTGCTCCCTCTGATATGCATGATCTGAGC
CCAACCACGGAATGGTGAATCTTACAGTTCTTGATCACACAACCTTCACCAATGACACTATCTGTGACATCGGCATCAAGCATTTTTGAA
GGTGGCAAATATCGAGGTTGGGTGTAGATTGGGGCTGATCGGTCGTAAAAGCTAAAATCTGGCACCGGCTTTTTTGTAATGCCCAAATTG
GCATTGTAGAAAGCTTCAATGGTACCAATATCTTCCCAGTACCCATCATATAAATAAGCTTGCACTCTCATCCCAAATGAAGTTGCACCA
GGAATAACTTCACTACCAAAATCATTGGCCCCAGGAAACTTGTCACGAAGTAGGTTTAACATCACGTCTTTGCTAATGACATATATACCC
ATACTGGCGATAAAAGGCATTTCTTTAGCTCTCTTGTCATCAAGACCTAAAATGGTAGTATCCACTTTCATTGCTTGCAATTGCTCTCCT
TGCGGTTTCTCTGCAAATTCAATAATGCGTCCTTCTTCATCAATCTTCATGAGACCGAATGCAGTGGCACGCTTCTCGTCCATTGGCAGT
GCGGCAACGGTAATATCAGCATCTGTTTCCCTGTGGGCTTGAATAAACTTTTCATAATCCATTCGATACAGATGATCTCCAGCAAGTATA
AGGTATTCAAGAACATTATGCTCCTCAAACAACCACAGATATTGTCTGACAGCGTCCGCAGTGCCCTGGAACCAATCGGGGTTCTCCGGA
CTTTGTTGAGCAGCAAGAACTTCCACAAAGCCCTCGTTTTTGTATCCTCCCATATTGCTAGCATATGCCCGTGAAAGGTGGCGATTTAGA
GAGGCAGAGTTGAATTGTGTGAGAACATAGATCTTGGATATGTTACTGTTCAAGCAATTGCTTACGGGAATGTCAATCAGACGATAATTT
GCTCCAAGTGGAACCGCAGGTTTTGCTCTTTTTTTAGTTAGAGGATAAAGTCGGGTCCCAGCTCCACCTCCAAGAATAATTCCCAAAACA
CTCCTGCTAGCATCTGGGTCCAGACATGTCTGTGAATTCTGCGAATCAGAAACAGCCTTAGGAGACACAATCAATGGACTTCTTCTCACA
TTGAATCGTACTCCTTGGGAACGTAAGGACGATACAGGCATCAACTTGTCTCCGGCGAGATGAGAAGACGAAAATGAGAGATTTCTGCTG
GATATTGCACGTGTAGAATCATTTCTTCTCTCATTGATGCAATTGTGGGAAGAAGGTGAAGATTTTAAGGCTCCAATGGAAGCCGCCATT
GTTAACAAAGCTTGCTCTCAACTATAGATACTTTCAAGATAAGCACTTGGTTTTCAGCAATGGCTTCTTCAGTAATGTCCTCAGCAGCTG
TTGCCACCCGCGGCAATGGTGCACAAGCTAGCATGGTTGCACCCTTCACTGGACTCAAGTCCACCGCTTCTTTCCCTGTTTCAAGGAAGC
AAAACCTTGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTCAGTTGCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTACGAGA
CTCTGTCGTACCTTCCTGATTTGTCCGACGAGCAATTGCTCAGCGAAATTGAGTACCTATTGAAAAATGGATGGGTTCCTTGCTTGGAAT
TCGAGACTGAGCACGGATTTGTGTACCGTGAGAACCATAAGTCACCAGGATACTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCA
TGTTCGGGTGCACTGATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGGCTTACCCACAGGCATGGGTCCGTATCATCGGAT
TCGACAATGTTCGTCAAGTGCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAAGTTCTAGAAAAACTAATTGCCCTATGTT
TATAGGGACAGTTTGTTTGAATTCTCCTTTGGGTTTTCCCTTGAGAAATTGTATTCATTTTCCCTTGTTTTCCATCTTTTTATTCCGTGT
ATGATTAATTCGAATTTCAATCAAGTTTACAAGAACTATATTAATGATATATGATTCTTTACTAAAAAAAAAAAAAAAAAAACTCGAGGG
GGGCCCGGGACCCCATTTCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TOMADPGPPS	ADP-glucose pyrophosphorylase small subunit

Genomic locations (0)

None

Library representation (29)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	8
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	18
Solanum lycopersicum	LB	Leaf Mature leaves	3316	52
Solanum lycopersicum	LC	Leaf Mature leaves	5712	30
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	69
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	9
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	27
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	7
Solanum lycopersicum	cLER	leaf 4 weeks	5127	172
Solanum lycopersicum	cLES	leaf 4 weeks	5243	128
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	348
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	13
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	44
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	12
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	107
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	9
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (1087)

Alignment image suppressed for unigene with 1087 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (48)

Annotations (manual: 8 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101573	Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978) Trimeric LpxA-like	70
2	119093	Trimeric LpxA-like Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978)	20
5	129502	Trimeric LpxA-like Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978)	19

Preceding Unigenes (3)

Unigene	Build
SGN-U225521	Lycopersicon Combined #3
SGN-U225527	Lycopersicon Combined #3
SGN-U225539	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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