Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578342 and SGN-U579403 in the current build, Tomato 200607 #2

Unigene SGN-U314730

Unigene Basic Information

Unigene ID:	SGN-U314730
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314730
mRNA sequence:	Length: 2753 bp

>SGN-U314730 Tomato 200607 #1 (78 members)
GGTGGATGAGTCGCCGAATGTTCCGATTAGGCTTTGGATTTGTGGGTATGCTTTGCAGTGTGTGGTGCATGTGGTGCTTGTGTGGTTGGA
ATATAGGAGGAGGAGTTTGCAAGGAGGAACTGATGTAGAGGGAAATGATGGTGAGGGTGGTGAAGAGAGGAACGGGGTTTTGGGTATTGG
TAATCAGTCAAGTTTTGCTAAACGATGTGAATATATGAATACAATGGGGTCACTTCTTTGGTGGATAATTGGCTTTTACTGGATAGTCTC
TGGTGGTGAAATTCTTTTACAGAATGCTCCACATTTATACTGGTTGGCAGTTGTATTTCTGGCATTCGATGTATTCTTTGCCATCTTTTG
TGTTGCTTTGGCATGTCTGATAGGAGTTGCTCTCTGTTGCTGCTTGCCTTGCATAATTGCAGTACTCTATGCAGTGGGTCAGGAAGGTGC
GTCCGAGGAAGATCTCAGAGTTCTCCCCAAGTATAGATTCCATATTTGCAAGAATGAGGAGAAACCAAGGGTAGGTGCTGGTAGGATGGT
ACCAATTGAGACAAGCAGCGGATACCTGGCCACTGAGCGTATTCTTTTACCTGAAGATGCAGAATGTTGCATATGTCTTACCTCGTACGA
GGATGGGGCAGAACTCCATGCTCTCCCCTGTAATCATCATTTTCACTCCACCTGCATCGTGAAATGGCTTAAAATGAACGCTACATGTCC
ACTATGCAAGTACAACATCCTGAAGGGAAATGATCAGGTTTAAAGCAGGGAGAATGAAAAACATTGTACATTGTTTCGGGTTATTAAAGC
CACTTATGGAAGCTTGAAACACTACTTGCTAAATCCATATCAGAACAGAAATCTGCTTTCCAACTAGTCAAGCTTCCTCTCATGTTCGCT
TAGCATATTGAGATCTTCTCTGTAGTGAATCGTCTTCTGTGATTAAAAAAAATGTAGCACCCCGCGAAGAATTAAAAACGAAGAAGAGTT
GGTCCTTCCCCCCAGCTCATGTAAATTATCTTTGGTTCCATTTGTTTCCAATAGGTATACAGGATCCAACTCTTGTAAGTATATGCTATT
TTCTTGTGTGTGGTTTATGTCCAGTTTTACTGTGCTCTTTTCTCTAAGAAAACAGAAAAGTGGGTGATAATTTGATATCTAAGTTTTACT
CAATTTGTTAATTATGAGCTTTGCAATTTTGTTGTTGTTAAAAAAAAAAAAATTGTTCTTCTCTTTGGAATTCTCCAGAAGCCGGAGTTT
CACCGGAGAATAAGAAATGGCGTTTATAGCTCGAAATGCGAAACTACTCACAGGAACGGCGCCGTTCCTTCAAAGGGCGGCGACGATCCA
CACGACACTTCCATCTCTCTCGCAGCAACCTGCCTCTTCTCCGGCCACTTACGGTGGCGCACAGCCTCCGTCCATGAATACACCAGCAGG
GATATCTAAACCGGCTGAGTATGTTATATCTAAGGTGGACGATCTGATGAATTGGGCTCGTCGTGGGTCCATATGGCCCATGACTTTTGG
ATTGGCTTGTTGCGCTGTGGAAATGATGCACGCCGGAGCTGCACGTTACGATTTTGATCGATTCGGTATTATTTTCAGACCTAGCCCTAG
GCAATCTGATGTTATGATTGTTGCTGGTACACTTACCAACAAAATGGCCCCTGCTCTTCGCAAGGTCTATGATCAAATGCCTGAGCCAAG
GTGGGTCATCTCCATGGGGAGCTGTGCAAACGGTGGAGGGTACTACCATTACTCGTATGCTGTCGTGCGAGGCTGTGACAGGATCGTCCC
TGTTGACATTTATGTTCCAGGTTGCCCACCTACTGCCGAGGCTCTTCTGTACGGAATTCTTCAATTGCAGAAGAAGATAAATAGGCGCAA
AGATTTGCTTATGTGGTGGACCCAATAAGAGCCTTGTTTTTACGTTTCCATCGATCTGTATGGAAATAAACGTTTGTTGAAGTACCATCC
AAGGAAGAGAGATCTTCTTGTTTTTCTTTTGGGTGAATCTTTTGTATCTCTCTGCTGGACCTTCTATGTTTCTTTTGTATGTTAATCTGA
TGTTTAGTGGTGCTGTCTAAGCTTAAGTTGGTATATTTCAATAAAGCTGCTGTGCATCCTCTAAAACTGGGGAATGGATTCAGATATTTT
GATTGTGAAGTGTAATTGATAGATTGGAGAAGACTTGTGCATCTAATCATATCATATATTATTATAAGGGGGGGCCCGAAGCACATTTCG
CCTTAAAATGCAACTTATAAAATTTTTCTTTTTTGTCTTAATTCCAACAAACTCTTTGTGTCTTGTACTATTCGGTTTATGTTTTGGATT
TATGAGTACCTAATTATATGATAATGATTTGGTGCTTTGTTTGTAAAAAAAAAAAAAAAGACATAAGTAGCATTTAAAAACAAAGTGTCC
CTAAAGACAATTTTGTTCCTAATATGAAACTTAGTAGCCTTCTGGCTTGTAGGCAATGAAACTGATACACTGCACTTGACGCACATTGTC
GAATCCAATGATTCTGACCCATGCTTGTGGGTATGCCTTTTTAGCCTCTTGAACCTCAGCCAACACTTGGGTTGCATCAGTGCACCCAAA
CATAGGCAACTTCCACATGGTCCAGTACCTTCCATCATAGTATCCTGGTGACTTGTTGTTCTCACGGTAGACAAATCCGTGCTCAGTCTC
AAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAATTTCACTAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ss5	Tomato RuBP carboxylase small subunit

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (78)

Alignment image suppressed for unigene with 78 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 3 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	120049	NADH dehydrogenase (ubiquinone) 20 kDa subunit - Biological Process: mitochondrial electron transport NADH to ubiquinone (GO:0006120) - Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137) NADH ubiquinone oxidoreductase 20 kDa subunit - Biological Process: mitochondrial electron transport NADH to ubiquinone (GO:0006120) - Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137)	11
5	135512		3

Preceding Unigenes (2)

Unigene	Build
SGN-U213872	Lycopersicon Combined #3
SGN-U225501	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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