Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578433 and SGN-U578882 in the current build, Tomato 200607 #2

Unigene SGN-U314738

Unigene Basic Information

Unigene ID:	SGN-U314738
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314738
mRNA sequence:	Length: 1721 bp

>SGN-U314738 Tomato 200607 #1 (24 members)
TTTGATCAACTCTTTTTCTCCTCTATCAAAGAGAGAAAAACACACAAAAAAATATAGGGGTGACCTTGATCTTGAAGAACATATAGTGCA
AAATGGCTAGAAAGTTGAGTTCTTTAGTTGTTTTTGGCTCAATTTTATTTGCTTTATTACAACATGTTGCTATGGCACAACAAACTCATG
TTGTTGGTGATACTTTGGGTTGGACCGTTCCTAATGGTGGCGCCGCCTCTTATTCCACATGGGCCGCCGGGAAATCCTTTGTCGTTGGTG
ACATTCTAGTATTTAACTTTAGAAGTGGATCACACAGTGTGGCTGAAGTATCAAAAGGGGCTTTTGATTCATGCAATACTTCAAGCCCAA
TTTCAATTTCAACAAATGGCCCAACAAATATTACATTGAGTTCTGCTGGATCACATTACTATCTTTGTACTTTTCCAAGCCATTGTACAT
TGGGCCAGAAATTGGCTATCAACGTCTCCGGCTCCGCCTCTCCCGCTCCTCAGCCAGCCCCCGCCACTCCACCCACCGCCACCCCGGTGA
TGGCTCCAGCCCCATCCGTGTCGGTTGCTCCGGCAACGGCACCTTCACCGGCTAGTGTAGCCCAAACTTATATTGTTGGAGATAATTTGG
GCTGGAGTGTTCCTACTAGTGGCCCAAATTCTTATCAAAGATGGGCTAATAACAAATCATTCAAAGTTGGAGATACTCTTGTTTTCAATT
TTGTGAATGGGACACATAATGTTGCAATGGTTAGCAAGGCATCTTATGACTCATGTAACACAACTTCTCCAATAAACACAATTAGCAATG
GTCCAGCCAGAATTAGACTCACAAATTCTGGTGAACATTACTATATGTGTACATTCCCTAGACATTGTTCATTAGGTCAAAAACTAGCCA
TCAATGTCACCGGTTCGGACGTGACCGCCCCCACGCCTTCCACCGCGGCTACACCATCCAGCCCCACCGTGCCATCGAGCGATTCGCCGG
TCAATTCACCACCAGCACCAAGTGCCTCAGCTCCATCTTTGGTTCTTGCAACTTTGCCACTCACTTTCTTGTCATTTGCCTTAGTTAGGT
TGTTGAATTAGAGAGTAATACTATAATATTTGATTTTAAGACTTATGTACCAATAAAGTTGATTTTTTTTTTTTTTTTTGTGAATTCTAG
CTAGATATTTTATTTTATTTTTGGTGTTGATTTTTGTTGTAATCATGATATTTTTCAATATTCTTCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAACAAGCTGCTGTACGTGATGTTCAGGAAGCTTGTGCTTTTGAATTGTACACTCTTCCTAAGCTATATTTGAAGATGCA
GTACTGTGTTTCATGTGCAATTCACTCCAAGGTGGTTAGAGTCCGCTCTCGTACTGATAGGAGAGTTCGCGAGCCTCCACAGCGTTTCAG
GCGCCCAAGGGATGATCTTCCAAAGACAGGACAAGCTCCACGCCCCGCTGGAGGACCCCCTGCTGCTCCACGCACTTAAATTATTAGGAT
TCAGGTTTTGGTTAATCTGATAGTTATGGCGTGTTTTACATGTGGTGGTTTTGACAGTGTACTGTTTTCATTTAGATAATGGGACATATT
ACCATGTTATGGAATTAAATTTTGAATGGAAACCAGATATTTAAGTTTTCTTAATGGACGACTTTTAATTTGTGTTTCTGATAAAAAAAA
AAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
dicyanin	dicyanin

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118490	Plastocyanin-like - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: copper ion binding (GO:0005507) - Biological Process: electron transport (GO:0006118) Cupredoxin	85
5	129137	Plastocyanin-like - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: copper ion binding (GO:0005507) - Biological Process: electron transport (GO:0006118) Cupredoxin	37

Preceding Unigenes (2)

Unigene	Build
SGN-U213376	Lycopersicon Combined #3
SGN-U213380	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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