Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579609, SGN-U580521, SGN-U580868, SGN-U581242, SGN-U590142, and SGN-U591424 in the current build, Tomato 200607 #2

Unigene SGN-U314789

Unigene Basic Information

Unigene ID:	SGN-U314789
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314789
mRNA sequence:	Length: 2528 bp

>SGN-U314789 Tomato 200607 #1 (176 members)
CCCCCCCCCCGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATCTATTCTCATTACTGCAG
TTTAGCGTACAGCTTACATAGCAGCAAATAAGATATGTAAAGGAAAACCTTGTCCGAAGCATTTATTCAAGCAATGCAGGACTTAAAATA
GAAATCATCATCATTATCAGCTTACGCGAAAAAGGGTGTAGAAGTTTATCAGTAGGAAACAAAGGAAAATAGAATTCACCAAGGACGAAG
AAGGTTGCAGTTTGCTTAACCAGTGAGAGCAGCATTAAGGGCGCTGTGTACATCAATTCCAATCTGGGCTTCAGCTTTTTCTACATCGGT
TGATGCAGTGTTTAGCTTCTGAGTGAAATCAGTGAGGCCCTTTTGAACCAAATTGGGGTCGATGCGATCAAGTGGTACAGCTTCAATTGC
AATTATATCTGCAAAAGAATTTGCATGAACAAATGCAAATCCACCACTCACAAAGTACTTGTTCACATCATTGCCCTCGTGAACTGATAA
AATACCAGGCTTCAGCTCAGCAATTGTCGCTACATGCCCAGGTAAAACACCCATCTGTCCTGTTGTTGCAGGGATTATAACCATGTCAAC
CTCTTTACCAGAGAGTTCAGAAGTGTAAGGAAGGACAAAGTTGACAGTGAGCTTAGACGGAATCGACGATGGAGTAGCCGGTCTAGGAGA
CATAAACGCAGATGGAGTTTTCGGTGGGTCCACATTAGGAACAACTTTCTTCCAAGCTTCCGCAAAGCTGGAATCTGCAACGTACTCCGC
CTGCAGGTCGGTTGCAAATGGACGGCGCCACGTCATCGTGGTGGCTCTGGCTAGGAATCGAGAACCGTGTCGAAACATTGTTCGGTGTGA
TTACGCAACGGAGATCGACGGCGATTGCAGAAAGTGATCGGAGTTTTACGAGGGTTTGATGGAAATGACTGACCTTTTGGATCTACACCT
ACTAAGCACACTTTGCTTTGATGCGACTTTCTTTTTGTGTATTTTTCAGTTTTTGTTGTTTGCTAGATTCGAATGCTGAAGAGAGAACTA
ATTGCTCTTTCTTCTTTTTTGATCTTACATTAGTACTGTACTTCACTAATAAGCTATGAGGGGTGATTCGTCGAAATACAATCCCAGAAA
ATGCTCGGTTGTGTAGAAAATCTTGTATAATTATATTGAGAACTTCTTAAAACGGGTAGTCCATTTTGCTCCAACTTCAAAGAGAATTGA
AATTGGGAAATCTGATATGTCTGGGAAGATTATGCATGCTGTTCAATACCACTCTTATGGCGGTGGAGCTGCTGCCTTGAAGCATGTGGA
AGTTCCTGTCCCTACTCCAAATAAGGATGAAGTCTTGGTAAAAATGGAGGCTACAAGCATAAATCCTCTTGACTCGAAAATTCAGAAGGG
CATGCTTCGTCCATTTCTTCCTTCCAAGTTTCCTTTTATTCCTACTACCGACGTGGCGGGAGAGGTTGTTGAGGTAGGATCTAATGTAAA
AAGTTTCAAGGCTGGTGACAAGGTTGTGGCTATGCTCAGTACCAAGAGTGGAGGTGGATTGGCTGAATATGCGGTACCTAAGGAGAGTTT
GACTGTTTCAAGACCCGCTGAAGTATCAGCTGCAGAAGGTGCAGGTCTTGTTATTGCAGGTCTTACAGCTCTTCAGGCCCTCGTCAATCC
TGCTGAGGTTAAGCTTGATGGAACTGGACCCCGGAAGAACATTCTAGTTACGGCTGCTTCGGGTGGTGTAGGTCACTATGCTGTTCAATT
GGCAAAACTTGGTAACGCCCATGTTACTGCCACCTGTGGAGCCCGCAACATTGATTTTGTGAAGAGCTTAGGAGCAGATGAGATTCTTGA
TTACAAGACTCCAGAGGGAGCTACTCTTAAGAGTCCATCAGGCCAAAAATATGATGCAGTGATTAACTGCACAACAGGCATCCCTTGGTC
TACCTTTGAGCCTAATTTAAGTTCAAGTGGAAAGGTGATCGATCTAACTCCTGGAGCTAGCTCCATGTTGACCTTTGCAGTAAAGAAATT
AACCTTCTCAAAGAAGCAGTTGGTGCCGTTTCTTGTAAATGCCAATAAGGAAAACCTGGAATTGCTTGTTAAGCTTGTGAAGGAAGGGAA
GCTCAAAACAGTGATTGACTCCAAATTTCCTCTGAGCAAGGCTGAAGATGCTTGGAGCAGGAGTATCGACGGACATGCGACAGGAAAGAT
TTTGGTGGAGCCATAAAGTAGTGATCTACCATATTATGTTATTATACATACGTGTGTTATAAAAGATTTGTGAGGCTTGTGCATTATGAC
CAGTTAAATCTATTCAGCTGCAACAACTTTTATTTGTCTTGTATGCATATGCAGCTTGTCAACTGTTTTTTATTTTTATTTTCATAATGC
TGTTCGATTAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ddtfr6a	ripening regulated protein (DDTFR6/A)

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	16
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	19
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	29
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	7
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	7
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	cTOS	suspension cultures	8026	12
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (176)

Alignment image suppressed for unigene with 176 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118870	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	27
5	129620	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	18

Preceding Unigenes (2)

Unigene	Build
SGN-U212905	Lycopersicon Combined #3
SGN-U212969	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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