Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U581242 and SGN-U590914 in the current build, Tomato 200607 #2

Unigene SGN-U314793

Unigene Basic Information

Unigene ID:	SGN-U314793
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314793
mRNA sequence:	Length: 1341 bp

>SGN-U314793 Tomato 200607 #1 (47 members)
GCGTGTCGCCCAAAAGATATACTCTATACTACTGCCGTCTACCGATTTCACCGCTATATATTCATTTCCTATACAATCTGTTTTCGCAGG
TTTTGTTCCAATTTCAAGGTGTTGTTGCTTCCCCAATTCACAGAGAATTGAAATTGGTGAATTTGATATGGCTGGGAAGATTATGCATGC
TGTTCAGTACGACTCTTATGGCGGTGGAGCCGCTGCCTTGAAGCATGTGGAAGTTCCTGTCCCAACTCCGAAGAAGGATGAGGTCTTGCT
AAAACTCGAGGCTGCAAGCATAAATCCTGTTGACTGGAAAATTCAGAAGGGCGTGCTTCGTCCCCTTCTTCCTACCAAGTTTCCTTTTAT
TCCTACTACCGACGTGGGAGGAGAGGTTGTAGAGGTAGGATCTAATGTAAAAAGCTTCAAGGCTGGTGACAAGGTTGTGGCTATGCTCAA
TACCCTGAATGGAGGTGGATTGGCTGAATATGCGGTGGCTAATGAGAGTTTGACTGTTCCAAGACCCGCTGAAGTATCAGCTGCAGAAGG
TGCAGGTCTTGTTATTGCAGGTCTTACAGCTCTTCAGGCCCTTGTCAATCCTGCTGAGGTTAAGCTCGATGGAACTGGACCCCGGAAGAA
CATTCTAGTTACGGCTGCTTCGGGTGGTGTCGGTCACTATGCTGTTCAACTGGCAAAACTTGGTAACACCCATGTTACTGCCACCTGTGG
AGCGCGCAATATTGATTTTGTGAAGAGCTTAGGAGCTGATGAGGTTCTTGATTACAAGACCCCAGAGGGAGCAGCTCTTAAGAGTCCGTC
AGGGCAAAAGTATGATGCAGTGATTCACTGCACGACAGGCATCCCTTGGTCTACCTTTGAGCCTAATTTAAGTTCGAGTGGAAAGGTGGT
CGATATAACTCCTGGAGTTAGTGCCATGTGGACCTTTGCAGTAAAGAAATTAACCTTCTCAAAGAAACAGTTGGTGCCACTGCTTCTGAT
TCCGAAGAAGGAAAACCTGGAATTGATTGTTGGGCTTGTGAAGGAAGGGAAACTTAAAACCGTGGTCGACTCCAGATTTCCTCTGAGCAA
GGCAGAAGATGCTTGGAGCAAGAGTATTGATGGACATGCTACCGGAAAGATTGTTGTGGAGCCATAGAGTACTGGTCTAAAAAGGCTTGT
GTGCAGTTTGTCATCTGGCTTGGAAACCAAAAAGTTAAAAGTTAAATTACAATTTACCCTTGTTATAAATTAAAATCTTATAAAAATATT
TAACTATTTAATTTGAATATTAAATTACATTATTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ddtfr6a	ripening regulated protein (DDTFR6/A)

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	13
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (47)

Alignment image suppressed for unigene with 47 aligned sequences.
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Markers Information (0)

Expression Data (6)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118870	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	27
5	129620	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	18

Preceding Unigenes (3)

Unigene	Build
SGN-U212908	Lycopersicon Combined #3
SGN-U212909	Lycopersicon Combined #3
SGN-U212910	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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