Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578237 and SGN-U581092 in the current build, Tomato 200607 #2

Unigene SGN-U314847

Unigene Basic Information

Unigene ID:	SGN-U314847
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314847
mRNA sequence:	Length: 2150 bp

>SGN-U314847 Tomato 200607 #1 (96 members)
AAAATGCATGGAGATGCATCTTCCGAAAGAAGAAAATAAGCAGGATCCTGCCGCAATGGGCTGTCTTCGGGCAAAAAAGCACCTATGGTT
TTCCCATACACTTCACAAGTGGAAAAGTGAATGAGACGCTTTCCATTTTATGAGCAGTACTTAACCACTGGTAGAGCATCAATGAAGTTG
CTGTAGATTGTGTCAAGCGGACGTGTATTATAATCAGCTGGAGTGCAGATTGCAGCAAGATTTACAGTCAGATCTGCCATTTTGATGAGT
CCTTCAAGACGAGAATCATTCTTAATGTTAATTCTGTGGAACTGTATCCGTCCATTCCAAGGTAGAGAAGTCGGTTCAAGCAGATGCTTG
ATTTTATCACTGTAAACATCGACGGCGAGCCAAAAAACCCCCCCCAGATTCCGGANTCGCTGACGTTTCCGACATGAGCTTCTCACATAA
GTGCGAGCCAATGAATCCACCGGCGCCGATCATGCAAATCGTCATCGGATTGATCGGATTGCCGTCTAGATCTACCCTCCCTCCTTTTTT
TCCTACTTCTAAAATCAACTATACAGAGTGAATTTTTCTGTGGAAAAATGGCAGGGAGGGTAGATCTAGACGGCAATCCGATCAATCCGA
TGACGATTTGCATGATCGGCGCCGGTGGATTCATTGGCTCGCACTTATGTGAGAAGCTCATGTCGGAAACGCAGCACACGGTGCTCGCCG
TCGATGTTTACAGTGATAAAATCAAGCATCTGCTTGAACCGACTTCTCTACCTTGGAATGGACGGATACAGTTCCACAGAATTAACATTA
AGAATGATTCTCGTCTTGAAGGACTCATCAAAATGGCAGATCTGACTGTAAATCTTGCTGCAATCTGCACTCCAGCTGATTATAATACAC
GTCCGCTTGACACAATCTACAGCAACTTCATTGATGCTCTACCAGTGGTTAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTTT
CCACTTGTGAAGTTTATGGGAAAACCATAGGTGCTTTTTTGCCCGAAGACAGCCCATTGCGGCAGGATCCTGCTTATTTTCTTCTTTCGG
AAGATGCATCTCCATGCATTTTTGGACCTATTGAGAAGCAAAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTGAGAGATTGATCTATG
CTGAGGGTGCTGAGAATGGCTTAGAATTCACCATCGTTAGGCCCTTCAATTGGATTGGCCCCAGGATGGATTTTATACCCGGGATCGATG
GTCCTAGTGAAGGTGTTCCAAGAGTATTGGCTTGCTTTAGTAATAACCTATTAAGGCATGAACCACTAAAACTAGTGGACGGTGGACACT
CGCAGAGAACCTTCATATATATCAAGGATGCTATTGAAGCTGTTTCCCTGATGATTGAAAATCCTGCTCGGGCCAACGGCCATATCTTTA
ACGTCGGCAATCCTAATAACGAAGTTACTGTCAAGCAGCTAGCTGAAATGATGACTCAGGTGTACTCAAAAGTGAGTGGAGAAACCCCTC
TTGAAACTCCCACCGTCGATGTTAGTTCTAAAGAATTTTATGGCGAGGGGTATGATGACAGTGACAAGCGGATTCCAGACATGACCATAA
TCAACAGACAGCTCGGTTGGAACCCAAAGACATCCCTATGGGACTTGCTTGAATCCACACTCACTTACCAACATAGGACATACGCGGAGG
CTGTCAAGCAGGCGATGTCAAAGACAACGACAAACTGAATGAATTCAGAGCAGAGCTTTACTATCTGTAATCTTCATCTACTCGGTTCGA
CTTCATCCTCGTTATTTATTCTTTGTCATCCACTTCATGCAAGAAACCTAAAGTAGGCCACAACAGTGAAATTGTGTGTCATATGTTGGT
ATAATGTCACTACAACAGTTTTCAGACACATAAATCAAAACAAGGCTGTAGTCTGCTCATATAATTTTGCTGTTATATTATCATTCTTCT
GTGAGGAAGTATGTTGTATCATTACACATATTTTCCTAATCTATTACTAGTATAATAATTTATTTGTTTGATTAAATTATCCTTTCACTT
TAATGTCTTTATGTTAGAGAATATTATCTTCTAAATACTAACTTTTACCATAGTTGATTTGAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	18
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	5
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (96)

Alignment image suppressed for unigene with 96 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	119284	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	17
5	129634	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	17

Preceding Unigenes (1)

Unigene	Build
SGN-U213087	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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