Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580191 in the current build, Tomato 200607 #2

Unigene SGN-U314880

Unigene Basic Information

Unigene ID:	SGN-U314880
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314880
mRNA sequence:	Length: 2147 bp

>SGN-U314880 Tomato 200607 #1 (55 members)
TGCTACATAAATATTTAAGTATTGCTTTGAACTATAAATATCGGTCTTTTAAATATTATGTCAAGTCAAAATTGTGTCACGTGAAATGAG
ACAGAGTGAGTACTGGTTTTTATTTGTTTGCTTTCTGTTTCTATATATTTGATAGTAGCTTGGATTAATTTAACTCAAGATTTGTGACTA
AAGTTCATTAGTTTTGTTCATCTTAAATGTCTCATAATTCCTGGAGAAGGATGCTTGCCTTCTAGATTGTTCAGTCTGTGTATTGTTTGA
TCATTGTTGGATGATCTGTTTCGTTGATTGGCTACCTAAACTCGATTTTGATGTATTCGATTTTTCAGAATTTCTCTATGTTTTGTGTGA
ATATCAGATTGTTGTAGACATAGAACACAACTTTTAGATCAACTTATTATATGTGCTGTGCCTTCTCTAGACTTCTAGTTGATCAACATG
GGTAAAGAGAAGGTTCACATCAACATTGTGGTTATTGGCCATGTTGACTCTGGCAAATCGACTACCACTGGTCACTTGATCTACAAGCTA
GGTGGTATCGATAAACGTGTCATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTTCTTGAC
AAGCTCAAGGCTGAACGTGAACGCGGTATCACTATTGATATTGCCTTGTGGAAGTTTGAGACTACCAAGTACTATTGTACTGTCATTGAT
GCTCCTGGTCATAGGGATTTCATCAAGAACATGATTACTGGTACCTCTCAAGCTGACTGTGCTGTCCTGATTATCGACTCCACGACTGGT
GGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACTCGTGAACATGCGTTGCTTGCTTTCACACTTGGTGTTAGGCAAATGATTTGTTGC
TGCAACAAGATGGATGCTACCACACCTAAGTACTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTGTCTTCTTACCTTAAGAAGGTT
GGTTACAACCCTGACAAGATCCCATTTGTGCCGATTTCTGGTTTCGAAGGAGATAATATGATTGAGAGATCAACTAACCTGGACTGGTAC
AAGGGTCCAACCCTTCTTGAGGCTCTTGACCAGCTTAATGAGCCTAAGAGGCCCTCGGACAAACCCTTGCGTCTTCCACTTCAGGATGTC
TATAAGATTGGGGGGATTGGGACTGTTCCTGTTGGTCGTGTTGAGACTGGTGTGATTAAGCCTGGTATGGTTGTGACTTTTGGTCCTACT
GGTCTGACTACTGAAGTTAAGTCTGTTGAGATGCATCATGAAGCTCTTCAAGAGGCACTGCCTGGTGATAATGTTGGTTTTAACGTCAAG
AATGTTGCGGTTAAGGATCTTAAACGTGGATTTGTTGCTTCCAACTCCAAGGATGACCCAGCTAAGGGGGCTGCTAGCTTCACCGCTCAG
GTCATCATCATGAACCATCCAGGACAGATTGGAAATGGATATGCTCCAGTGCTGGACTGTCACACCTCCCATATTGCTGTCAAGTTTGCT
GAGATCTTGACTAAGATTGACAGGCGTTCTGGTAAGGAACTCGAGAAGGAGCCTAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAG
ATGATTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGAGTACCCACCATTGGGACGTTTTGCTGTGAGGGACATGCGTCAAACTGTT
GCTGTTGGTGTTATCAAGAATGTTGACAAGAAGGACCCATCTGGAGCCAAGGTCACCAAGGCTGCTCAGAAGAAAAAATGAATAGTGCAG
TTCAACTCTGGAGTTACCAGAGATATCAGTATCTACTATAATAAAGTGTGTTATGAAAACTTGCTATACTTTACTCTTCCTGCTCATGTT
CAGTCTTTTATGTTGTTGTTTGGTTCTTGTTTTCTGCCCTGTATGTCAGGTATCCTTTCCCAGAACTGGGTGCTCGACAGACGGTGGCAA
AAGACACAGTTAAGAGTCATTTGGTTTATCTTTTGAGGTGCCTAGGTTCATCCAAGACAGGCTAAGAAGCTTTGTTATTTATGTTTTCTT
ATAACACGTAAATCGTACTTTTTCTGTTTTTGTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	19
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	15
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (55)

Alignment image suppressed for unigene with 55 aligned sequences.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	128992	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	75

Preceding Unigenes (1)

Unigene	Build
SGN-U212847	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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