Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577577 and SGN-U580418 in the current build, Tomato 200607 #2

Unigene SGN-U314885

Unigene Basic Information

Unigene ID:	SGN-U314885
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314885
mRNA sequence:	Length: 2397 bp

>SGN-U314885 Tomato 200607 #1 (143 members)
TTTTTTTTTTTATGAAAACAAATCTATATTACGCCAAAAAATAATTAATAAAATCGACAAAAAAAATGAAGAATCGCAGAATAGAGATTT
TTTTTTTCTGAAGTAGATCTATGAAATAAATTAGGTAAAATAAACTCAATACATAGGGCCGTCCAAAATATCATATATCAAAAAAGCTAC
TCTGGAAAACGCAGAAATAATCCATAGAACAGAAGAAATGCATAGACTATACATACACGAAGCAGTTCCTAGTAACATATCATATATTCA
TATACACCAGAAAACACGAAGAAATCTGAAATGCAAACAATGAATAAGCAGTAGAAAATTGAGACAAACTCATCTCACTCTCTACTCTTC
AAAAACTTCAGATCCTGAGTGCAGATCCGAAGAGGAAAGCGAAAACAGTGACAGCACAGCCAGCGGCGAATGACGGAGACATAGATCCGG
CGGAAGAAGCAGGTGCCGGTGCAGGTGCGTCGGCAGCTATTGTAGTTCCGATGAGAAAACAAACAACGACAATTACAGCAAGGACTGATG
AAGTTGCCTTCGAGACCGCCATTTCTGTTGAGAAGTGATACTGAGAAAAGTGAAGAGAGATGTTAACTGGCGGGCATTATTTCTCCTCAG
CTGTGCCGCATATCGCCTAATTTTTCTTCTCTAAGTTTCTTAGTGTCTCAAGATGGGTAAAGAGAAGATTCACATCAGCATCGTGGTCAT
TGGTCATGTTGACTCTGGAAAGTCGACTACCACTGGTCACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTTATTGAGAGGTTCGA
GAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAACTTAAGGCAGAACGTGAGCGTGGTATCACCAT
TGATATTGCTTTGTGGAAGTTTGAGACCACTAAGTACTACTGCACTGTTATTGATGCCCCCGGCCACAGGGATTTCATCAAGAACATGAT
CACTGGTACCTCTCAGGCTGACTGTGCTGTTCTCATTATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATCTCCAAAGATGGTCAGAC
CCGTGAACATGCATTGCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAACAAGATGGATGCTACCACCCCCAAGTACTC
CAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGTTACAACCCTGACAAAATCCCCTTTGTTCCAAT
CTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCTACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACCAGAT
TAATGAGCCCAAGAGGCCATCAGACAAGCCCCTCCGTCTTCCACTTCAGGACGTTTACAAGATTGGTGGAATTGGAACTGTCCCCGTTGG
TCGTGTTGAAACTGGTGTGATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTACTGGTTTGACAACTGAAGTCAAGTCTGTTGAGATGCA
CCACGAAGCTCTCCAGGAGGCACTCCCTGGTGACAATGTTGGGTTCAATGTTAAGAATGTTGCTGTTAAGGATCTTAAGCGTGGTTATGT
TGCCTCAAACTCCAAGGATGACCCAGCCAAGGGGGCAGCCAGCTTCACTGCCCAGGTCATCATCATGAACCATCCTGGCCAGATTGGAAA
TGGATATGCTCCAGTGCTTGATTGTCACACTTCCCACATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGATTGACAGGCGTTCAGGTAA
GGAACTTGAGAAGGAGCCTAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTT
TGCTGAATACCCTCCATTGGGTCGTTTTGCTGTGAGGGACATGAGGCAGACTGTTGCTGTTGGTGTTGTCAAGAATGTTGACAAGAAGGA
CCCAACTGGTGCCAAGGTGACCAAGGCTGCCCAGAAGAAGGGGAAGTGAACTGTGCAGTGTGATGCTGGTGTTTCGAATGCTATTTATTT
ACATCGAGTGTGCTATCTAGACTCTGTTTTATTTAATTCTGCTTTAGTTTGGTCTTTGAGTTGTGTATTAGGTTGTAGTTCTCTGACTTG
TATCTCAAGTATCCATTCTCAGAACTGGGTACTTGATAGGCGGTGGCGAGCATGATTTTGAGTCTGTTATCATTTGCTTTTGTTGAGGTG
CCTTGGTTTGTTTTCCATGGTGGCTCAGGATTTTTGTTGCTTTAATTTGAGATTTAAGTTTTCTACTCATTACGTTACATTTAAGTTAAC
ATGTTACCTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X14449	elongation factor 1-alpha

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	14
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	16
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	24
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	7
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (143)

Alignment image suppressed for unigene with 143 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	128992	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	75

Preceding Unigenes (4)

Unigene	Build
SGN-U212838	Lycopersicon Combined #3
SGN-U212839	Lycopersicon Combined #3
SGN-U212841	Lycopersicon Combined #3
SGN-U212845	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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