Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572517 in the current build, Tomato 200607 #2

Unigene SGN-U315008

Unigene Basic Information

Unigene ID:	SGN-U315008
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315008
mRNA sequence:	Length: 1299 bp

>SGN-U315008 Tomato 200607 #1 (26 members)
GTGGACTGCAAGTCCAACAACTGTTTCCCTGTGGTACAACTACAACAGCAGTTACTCCGTCTCCGCCAGTACCGCCGGCAGCTTTTCATC
TCCGATCCTCCGGTTCACGACGGCGATATCCTTCTCTAGACATACTCAAGAGTCCATCCAGTTTGACCTAAGATGGACCAGTATGAAAAA
GTTGAAAAGATTGGTGAAGGAACGTACGGCGTAGTGTACAAAGCTCGTGATCGTGTAACTAATGAAACTATTGCACTGAAGAAAATTCGG
CTGGAGCAGGAAGACGAGGGTGTGCCAAGCACGGCTATTAGAGAAATCTCCCTCTTGAAAGAGATGCAGCATGGAAACATTGTGAGGTTG
CAAGATGTGGTTCACAGTGAGAAGCGATTATATCTAGTGTTTGAATATCTCGACTTGGATTTGAAGAAGCATATGGACTCATGTCCCGAG
TTCTCTAAGGATCCGCGTCTTGTAAAAATGTTTTTGTATCAAATTCTCCGTGGAATTGCTTATTGTCATTCTCATAGAGTTCTTCACCGA
GATCTGAAGCCTCAGAACTTGCTGATAGATAGACGTACAAACGTTCTAAAGCTTGCAGACTTTGGATTGGCTAGAGCATTCGGCATTCCT
GTCAGAACTTTCACCCACGAGGTGGTGACGTTATGGTACAGGGCACCAGAAATACTGCTAGGATCACGCCACTACTCTACTCCTGTTGAT
GTTTGGTCAGTAGGCTGCATATTTGCTGAGATGGTGAACCAGCGGCCTCTGTTTCCGGGTGACTCCGAGATTGACGAACTTTTCAAGATT
TTCAGAGTTGTGGGTACTCCAAATGAGGATACATGGCCTGGAGTGACTTCTTTGCCTGATTTTAAATCTGCTTTTCCAAAGTGGCCATCT
AAGGACTTAGGAACTGTAGTCCCTAATCTTGGTGCAGCAGGCCTTGATCTCATTGGTAAAATGCTTTACCTAGACCCCAGCAAGAGAATC
ACTGCCCGAAGCGCCCTTGAGCATGAGTACTTCAAGGACATTGGGTTCGTACCATGAATCGAGCACCTGCATCTTCAGTTCTAATGTATA
TTTGAGTGTGTTATTTTTAGGCTTTATTTGTCCTCTACTTTTAATTATATTTCCTCCAATGACATCCAATCTGTTTACGATTCACGCTAG
ATGTTTGAAGATAGTTTCACTGCAATTTCCTTTGGTTTTGTATTTTATGGTTCAGACAATACTGGAAGACAGCAATCCATTCTGCTTTCT
TCATTAAAAAAAAAATGGGGTTACATTTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cdc2a2	LEY17226 cyclin-dependent protein kinase 2A-2	protein kinase

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
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Markers Information (0)

Expression Data (12)

Annotations (manual: 6 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118420	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	253
5	128957	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	116

Preceding Unigenes (1)

Unigene	Build
SGN-U215180	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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