Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580429 in the current build, Tomato 200607 #2

Unigene SGN-U315031

Unigene Basic Information

Unigene ID:	SGN-U315031
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315031
mRNA sequence:	Length: 1785 bp

>SGN-U315031 Tomato 200607 #1 (46 members)
ATGCGGACTCACAATTTTTCAACAAATTGTTCTCTGCATCTGCTGAAATAAAATAAATTGAAAATAAAAATAGTGATAGAAGAAATTTTT
GAGTTATGCCTTCGTTAGAGGAGGAGTTGTTTCCGTCTACACCGGGAAAATTCAAGGATAGAAATCGACATTTTCATCGATGTTTTGCAT
CTACAAGCAACATGTTTCTATGGGCATTGTTTTTAATAGCTTTAACAGCTTCATATTTGTGTTTTCAGTCGTTTATGGATTCCGGTAACC
GGTATTTCACCTCTACATGGGGTGGTCATCATTGGGAGAGAAATGTTATTAATTCGGCTCAGATCCGCCGCTCTCACGGCGGAATGTCGG
TGTTAGTTACCGGCGCAGCCGGTTTCGTCGGTTCCCACGTCTCCCTCGCCTTGAAGAAACGAGGCGACGGAGTTGTAGGAATCGATAATT
TCAACAACTACTACGATCCGTCGTTGAAAAAAGCTCGAAAGAATCTACTCACCCAGAATTCGATTTTCATCGTCGATGGTGATATCAACG
ATTCAAAATTGTTGGTAAAGTTGTTCGACATTGCTCGATTTACACATGTAATGCATCTGGCTGCTCAAGCTGGAGTTCGTTACGCCATGG
AAAATCCAGGTTCGTATATACACAGTAACATCGCCGGCCTTGTTTCCCTGCTCGAAGTTTGTAAAAATTCGAACCCACAACCCGCCATTG
TTTGGGCGAGTTCAAGTTCTGTTTACGGGTTAAACGAAAAAGTACCGTTTTCCGAATCGGATCGGACTGATCAACCCGCTTCATTGTACG
CCGCTACGAAAAAAGCAGGTGAAGAAATTACACACACGTATAATCATATTTACGGTTTATCGATAACCGGGTTAAGATTCTTCACAGTTT
ACGGACCGTGGGGAAGACCCGACATGGCTTATTTCAGCTTTACCCGCAATATATTACAAGGGAAACCGATTACGGTTTATCGAGGTAAGA
ATCGAGTTGATTTAGCTCGGGATTTTACTTACATCGATGATGTGGTAAAGGGTTGTATCGGGTCACTTGATACTTCCGGTAAAAGTACCG
GGTCGGGTGGGAAGAAACGGGGACCCGCTCCATATCGGATATTTAATTTGGGTAATACGTCGCCGGTGACAGTTCCGATGATGGTTGCGA
TGTTAGAGAAGCATTTAAAGGTTAAAGCTAAGAAGAATTTCGTCGTAATGCCCGGAAACGGCGACGTTCCGTTTACTCATGCGAATATAA
GTTCGGCCCGGAAAGAATTCGGGTATAAACCCACAACCGATTTACAAACCGGGTTGAAAAAGTTTGTTAAATGGTATCTCTCTTATTATG
GCTATGATCAAGGAAAGTTGTAAATTGATAATTTATTTTTAAAAAAAAATTTCATGTTGTGGTTATTTTAGATTTTTTCTTTTTCTTTTT
TGTAATCACAAAAGCAAGAAAAAAGAAAAGAAAAGAAAAGGTGAATACCAATTCTTTTTTTTTTTAATTAATTATAATTATTATTATTGG
GGAAAGAGGAGGGAAAAAAATTTGATAAACTCCCTTTCCCTTTTTTAAAACAACTTGTTATTGCTTTCCTTGCAAAGGATAAAAAAAGTT
AATTTTTCTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAACCCCCCCCCCAAGGGGGCC
CCTTTTTATTTTTTAAGGGCCCCCAAAAAAAGTGGGGGAAAAAGGGGGAAACAATTTTTCCGGGGGGAAATTTTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	13
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (46)

Alignment image suppressed for unigene with 46 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118686	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287) Nucleotide sugar epimerase - Biological Process: carbohydrate metabolism (GO:0005975) - Molecular Function: racemase and epimerase activity acting on carbohydrates and derivatives (GO:0016857)	35
5	129150	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287) Nucleotide sugar epimerase - Biological Process: carbohydrate metabolism (GO:0005975) - Molecular Function: racemase and epimerase activity acting on carbohydrates and derivatives (GO:0016857)	35

Preceding Unigenes (1)

Unigene	Build
SGN-U214294	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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