Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U582402 in the current build, Tomato 200607 #2

Unigene SGN-U315088

Unigene Basic Information

Unigene ID:	SGN-U315088
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315088
mRNA sequence:	Length: 1838 bp

>SGN-U315088 Tomato 200607 #1 (23 members)
GCTGTCATACCAAAAAGGACAAATTTTTGTCTAGCTTTTTTCAAGTATATTATTTTTTTTAATTTTCTCAATTGAAAAGAAACATATATA
CACCTATGTTTTATCTTTCTTGAAATTCGAAAAATTTTAACAAAAAATTATTCTTGTAAACACTTGTGCAGTGTTTCTTTTGCTGTTGTT
TTGTTTTACAGATGGGTAACTGTTTAGGTTCATCAGCTAGAGTTGATGCCACTCTCAGCTCTCACAATATTTCTGCTTCCGGAGCCTCTA
GGATTCCCAGCAGAACCAGCCATTCTTCTGTTCTTTCAAGTCTAAGTATTCCATCTTATAGTCGGAAAAGCAGCGCTGATACTCTTTCTA
CTCCAAGATCTGAAGGCGAGATTTTGTTTTCTCCCAATGTTAAGTCCTTCTCATTTAACGAATTGAAAAGTGCAACAAGGAACTTTAGAC
CTGACAGTCTTCTTGGCGAAGGAGGATTTGGTTATGTTTTCAAAGGATGGATTGATGAACATACTCTTACTGCTGCAAAGCCTGGTTCTG
GAATGGTCATTGCGGTCAAGAAATTGAAGCCAGAGGGTTTTCAGGGTCACAAGGAGTGGGTGACTGAAGTTAATTACCTTGGCCAACTTC
GTCATCCAAATCTGGTTAAACTCATTGGCTATTGTATAGAGGGAGATGATCGGCTTTTGGTGTATGAGTTCATGCCTAAAGGAAGCTTGG
AGAATCATTTATTTCGAAGAGGGCCTCAACCTCTTACTTGGTTGACAAGAATTAAGGTGGCTATTGGTGCTGCTAGAGGCCTTGCTTTCC
TACATGATGCTAAAGAACAAGTTATATATCGGGATTTTAAGGCTTCTAATATTCTCTTAGACGGGGAATTTAATGCAAAGTTGTCTGATT
TTGGTTTAGCCAAGGCCGGCCCAACTGGTGATCGCACTCATGTGTCCACTCAAGTCATCGGTACTCAGGGCTATGCTGCTCCAGAATATG
TTGCTACAGGTCGATTGACATCAAAAAGTGATGTATACAGCTTCGGGGTTGTATTGCTTGAACTTTTATCAGGGCGTCGTGCTCTCGATA
AAATGAAGGTTGGCGTAGAGCAGAATCTTGTGGATTGGGCAAAGCCATATCTTGGGGACAAGAGGAGGTTGTTCCGAATCATGGACACTA
AACTAGAGGGACAGTATCCTCAGAAAGGAGCATATACAGCTGCTAACCTTGCTTGGCAGTGTCTAAGCAACGAGCCTAAGCTAAGGCCGC
GGATGTCTGAAGTTTTGGCTGCTCTTGAACAGCTTCAAGCACCGAAAGGCGTTAACAAAATATCTCAGATTGAGCATCGAGCCACTTCTA
GCTCAGTTCCAGCTTCTCCATTTAAACACCGTTCATCACTCAGCGTGACACCCTCTGCGTCTCCATTAAAGGCCTATCATAAGTCGCCAC
GCGGAAGGTGACTCCAGGAAAATAAACTTATATTTTGTTGTCATTGTAAAGTTTTCCTATATGTAACCAATTTTGTTGTCTAGATGCATT
GATATGTAGAATCAACAGATTGTTTCAACGTAAAATGTTGGAAATATCACTCTGTAACCTATTGATTGATGAGTTAGCTCTTCTGCTCGT
TGGGTACAATTAAAAAAAATTTCACATAATGGGTTTTTTTCTTCTTCTTGAATTATTATGTCCATACCCTTAACCCCACCTTCATTTAGC
AAGACTGCACGAGAATGGATTCAGAATTTAACCTTTATACCTTTATTGATTTGAGTTCAAGAATTTATTGTAACTTATTTAACTTACTAG
TTCTAAAGTCAATTATTTATATTACTAAGTGAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128927	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	615

Preceding Unigenes (1)

Unigene	Build
SGN-U214229	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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