Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576494 in the current build, Tomato 200607 #2

Unigene SGN-U315099

Unigene Basic Information

Unigene ID:	SGN-U315099
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315099
mRNA sequence:	Length: 1416 bp

>SGN-U315099 Tomato 200607 #1 (47 members)
GGAGATGTGGGGTCATTGGGCGGATAACGCATGGTTGGAAAACCGTTATTTTCCAACCAAATGAAAGCTGAAACAATTTGAGTGGTACCT
AACGATTTCAATGGCGTTGAGAGTTGTCTCTTCTTCTCCGGCCATTTTTTCATCACAAAGAAGAGCTGCTTCAGTTCTACCATCAACACT
CACATTACCCAATACCAACAGCTCCCTGTTATCGTCATCATCACCCATTTCTTCAATTGACAGAACAAAATCAGTTGTTACTCTCCGTAG
CAAGACGAGTAGGCGTAGTGGAGTAGTGACATGTTCTGCTTCGGTCCTCCCAAAGGCACTGCTATTCGACTGCGATGGCGTACTTGTCGA
TACTGAAAAAGATGGTCATCGTATCTCTTTCAATGATACCTTTTCTGAGAAGGAATTGGGTGTAACTTGGGATGTTGATTTGTATGGAGA
ATTACTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCCTACTTTAACAAAGTAGGTTGGCCAGAAAATGCACCAAAAACTGAAGAAGA
AAGAAAGGAGTTTATTGCAGGACTTCACAAGCGAAAGACCGAATTATTCATGGTTCTCATTGAGAAGAAATTGCTACCACTTCGGCCAGG
TGTTGAAAAGTTGATTGATCAGGCTCTGGGTAATGGAGTTAAAGTTGCAGTATGCAGCACTTCCAATGAAAAGGCGGTCTCAGCCATAGT
CTCGTGCTTGTTGGGACCAGAGCGAGCAGAACAGATCCAGATATTTGCAGGTGATGTGGTTCCTCGAAAGAAGCCTGATCCGGCCATTTA
TCTGTTAGCAGCCGGAACCCTTGCGGTTGATCCTTCAAGTTGTGTTGTCGTAGAAGATAGTGGCATAGGTCTTGCAGCTGCCAAAGCAGC
TGGAATGACGTGCATTGTGACCAAGAGTGGGTACACAGCAGAAGAGAATTTCTCAAATGCAGATGCAGTTTTTGATTGCATTGGAGATCC
TCCTGAGGAACGGTTTGACTTGGCATTTTGCGGAAGCCTTCTTGAGAAACAATATGTGAGTTAGTGCATAAGGGCGCTTGTTTATTGGCA
TGTTTTGCTCACCACATATCAGTTCATGTACTGTATCTCCCCAATGACTGTTCAATAAAAAGTCTAATGTCATTTCAAATCTTGAAAAAT
AAACTGTTAGTCTCCAAACACAATATATGAACTTCCAGTTTTCCTTTTCTTTTGTAGAGTGTGGAGAGGAGGTGATAGAAATGATAAAAT
TACTATTTGCATAGCATAAAGACACAACTTACAAATTAATAAACATAATTTTAGGAAAAAAAAAAAAAAAATTTGAGGACATTAGTACTA
TGTTGGATTTTTTTCCTTTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	7
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (47)

Alignment image suppressed for unigene with 47 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	120774	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) HAD-superfamily hydrolase subfamily IA variant 3	8
5	135084	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Haloacid dehalogenase/epoxide hydrolase - Biological Process: metabolism (GO:0008152) - Molecular Function: hydrolase activity (GO:0016787) HAD-superfamily hydrolase subfamily IA variant 3	3

Preceding Unigenes (1)

Unigene	Build
SGN-U214698	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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