Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581608 in the current build, Tomato 200607 #2

Unigene SGN-U315207

Unigene Basic Information

Unigene ID:	SGN-U315207
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315207
mRNA sequence:	Length: 1800 bp

>SGN-U315207 Tomato 200607 #1 (43 members)
GGCGATTGGCGGCCAATCGGCCGAATTCTTCAAGAACGTTAAGGCTTCGCTAGTGGAATTGGTACACACGGTGAAATGAAATAAACAATA
ATCCACTGTGGCAATCGAGGCGACCTCGACAAATTATCCACATCACAAGTCACACAGCACCGTTTAATTTCCAATTGCATGAAGAGTATA
ACCTGTCTCCACAGCCTCAAATTCGTCAGGTAGTAGGGCCGCTCCAATATTTGTACAAATCTTCTTCATCTACCTCGCACTCACACCTAG
CAGGACTACTGTGAAGCCGGCGGCAAAGGAAACTGAGAAAATGCCTGGGATTAAAGGGCCTTCCGATTATTCGCGAGAACCCCCTCGCCA
TCCTTCTCTTAAAATTAATGCCAAGGAACCCTTTAATGCTGAGCCAACTCGTTCAGCTCTGATTTCATCTTATGTCACTCCTGTTGATTT
CTTTTACAAGAGAAACCACGGACCCATACCAGTAGTGGATGACATAGAGAGGTATTCCGTTTCTCTGAGTGGTCTTATAAAAAATTCCAA
AGACTTGTTTATGAAGGATATTTGTAAGCTTCCAAAACATACGGTTACTGCCACTTTACAGTGTGCTGGTAACAGAAGAACTGCTATGAG
TAAGAGTCGAACAGTGAAAGGAGTTGGTTGGGATATTGCTGCTTTAGGAAATGCTGTTTGGGGTGGAGCCAAATTGGCAGATGTTCTAGA
ATTAGTTGGAATACCTTATTTGGCAAGTATCACACAATCTGGAGGAAAACATGTGGAATTTGTGAGCATTGACAAGTGTAAGGAGGAAAA
TGGAGGTCCTTATAAGGCATCAATTCCATTGAGTCAGGCTACAAACCCTGAAGCTGATGTTCTGCTCGCTTATGAGATGAATGGAGAGCC
ACTTAATAGGGATCATGGCTATCCACTGCGTGTGGTTGTCCCTGGTGTGATAGGTGCCCGTTCAGTTAAGTGGCTTGATTCCATCAATAT
CATTGCCGAAGAATGCAAGGGATTCTTTATGCAAAAAGACTACAAGATGTTTCCACCAACAGTGAATTGGGATAACATCAACTGGTCTAC
TAGGAGACCGCAGATGGACTTTCCTGTTCAGAGCGCAATATGTTCCCTGGAGGATGTGAGTGTTGTAAAGCATGGAAAGATAAACATCAA
GGGGTACGCATTATCAGGAGGTGGGCGTGGCATAGAAAGGGTAGACGTGTCTATAGATGGTGGTAAAACTTGGGAGGAAGCCACCAGATA
CCAGAGAACTGGTGTTCCATATATTGCTGATGATTCAAGCAGTGACAGATGGGCATGGGTCTTTTTTGAAGCTGAGGCAAATATTCCCCA
GAGTGCGGAAATAGTTGCTAAAGCGGTGGATATATCTGCAAATGTCCAACCTGAAAGTATAGATTCTGTCTGGAATCTGAGAGGAATCCT
GAACACCTCATGGCATCGGGTTCATGTCCGAGTTGGTCAAGCAAATCTTTAGGCTGTGTTTGGTGTGTTGAAGCGGATGACAGTAATCAG
CATATCAGGCCATGGTTGTTTGTATCCTTCTTAGCTTAAAATGAAAATAGCATGGTGGTTTGCGTCTTCCTAGCTTAAAATGAAAATAAA
ATGTTCTCTTGATGTTGTCTCGAAATACTTACGGAAATAATAATAATTTGGAAGTGATTGCATCTTGACAAAAAAAAAAAAAAAAATCTT
CTCCAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGAGAGAACTAGTCTCGAGGGGGGGCCCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
sulox	sulfite oxidase

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (43)

Alignment image suppressed for unigene with 43 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101530	Cytochrome b5	85
2	120603	Mo-co oxidoreductase dimerisation domain - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase molybdopterin binding - Biological Process: electron transport (GO:0006118) Eukaryotic molybdopterin oxidoreductase - Biological Process: electron transport (GO:0006118)	8
5	133586	Mo-co oxidoreductase dimerisation domain - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase molybdopterin binding - Biological Process: electron transport (GO:0006118) Eukaryotic molybdopterin oxidoreductase - Biological Process: electron transport (GO:0006118)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U215342	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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