Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579036 in the current build, Tomato 200607 #2

Unigene SGN-U315238

Unigene Basic Information

Unigene ID:	SGN-U315238
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315238
mRNA sequence:	Length: 1298 bp

>SGN-U315238 Tomato 200607 #1 (21 members)
ACGAAATGGACAGAGAATGGGGTTCGAAGCCGGGAAGCGGCGGCGCCGCCTCTGCCCAGAACGAGGCAATCGACCGCCGTGAGCGGTTGC
GCCGGCTGGCTTTAGAAACCATAGACCTCGCAAAAGATCCTTATTTCATGCGAAATCATCTCGGAAGCTATGAATGTAAGCTTTGCTTGA
CGTTACACAACAATGAAGGGAATTACTTGGCTCACACTCAAGGAAAACGGCATCAGACTAATTTAGCTAAAAGAGCTGCTCGTGAAGCTA
AGGATGCTCCTGCTCAACCTCAGCCTCATAAGCGCAAAGTTACTCTCAAAAGAAATGTTAAAATTGGTAGGCCTGGCTACCGAGTGACCA
AGCAATTTGATCCGGAAACAAAACAAAGATCTCTTTTATTCCAGATTGAATATCCTGAGATTGAAGACAACACAAAGCCAAGGCACCGAT
TCATGTCCTCATTCGAGCAGAAAATCCAACCATTTGACAAAAGATATCAGTTTCTTCTGTTTGCTGCTGAACCATATGAGATCATTTCAT
TTAAGGTTCCAAGCACTGAGATTGACAAATCAACTCCCAAGTTTTTCTCGCATTGGGATCCAGATTCGAAAATGTTCACTTTGCAGTTAT
ACTTCAAGACTAAGCCACTGGAGACTAACAAGCCACCAACTGCTCCTACAGACAACGGGTTGTCAGCACCAGGTGCCTCATCCAGGCCTC
TACCTCCACCACCCCAAGCTCCACCTCCACCTCCACCACAAGGTCTTCCTCCTGGAGCTCCAAATCCTCCACCCAGAGGCCCACCATCTG
GATCAATGCCTCCACCCCCTCCCCCTATGGGTAACGGACCTAGACCTATGCCACCAGGAGGTAACTTACCTGCCCCACCACCTCCTCCCG
TTGGTGGTGGAGCTATGGCTAATTTCACTCCAGGTGGACACATGGGTAGACCTCCAATGATGCCTCCACAAGGTTTTCCAGGTCAACAAC
AGATGCAAGGCCAAGGAATGCGCCCACCACCTCCACCACCCAACATGGGTTGATGAACCGAAGTCATAGAACCTACCTTTAATTGCATGG
TACGAAAATTCGACTTTTCGTGCTGATTTTTGAGTTTGTGGTTTTCGTCCATTTAAATCTTTCAAAATCATTTATGTTGCCAGAAACTGT
TGTATCTGTTAGGCCGACTCGTTTATCTTTGAAGGCTTTTGAGAATGTAATAGAATACCATTTTAAAAGCAGCTTATTGCTTTTCAGATC
CTAAGATTAAAAAAAAGCAACTTCTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	123316	Zinc finger U1-type - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270) Zinc finger C2H2-type matrin - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270)	4
5	132526	Zinc finger U1-type - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270) Zinc finger C2H2-type matrin - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270)	5

Preceding Unigenes (2)

Unigene	Build
SGN-U215749	Lycopersicon Combined #3
SGN-U218453	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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