Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577260 in the current build, Tomato 200607 #2

Unigene SGN-U315256

Unigene Basic Information

Unigene ID:	SGN-U315256
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315256
mRNA sequence:	Length: 1321 bp

>SGN-U315256 Tomato 200607 #1 (42 members)
GGCGATTGGCGGCCAATCGGCCGAATTGACTTCAAACATAAAAATATTTAAAACTTATAAAAAAACAATACTCAAACAACATGATCAAAA
CATCAAGTTGTATATTTTCTTTCTTTCTTCTAATATGTTTCTTGGTAGTGGTGGCTTTTGGTGGTACTTTCGACCAAGAATTTGATGTTA
CATGGGGTTATGGGAGGGTGAAAATACTCGAAAACGGGCAACTTCTTACTCTTTCCCTCGATAGAAGTTCTGGCTCTGGATTTAAGTCTA
AACAACAATATATGTTTGCAAAGATTGACATGAAGATCAAACTTGTCCCTGGTAATTCTGCTGGCACCGCTACTACATACTATTTATCTT
CGGTGGGGTCAGCTCATGATGAGATTGACTTTGAGTTTCTTGGGAATGTAAGTGGAGAACCATATACTCTTCATACAAATGTGTATGCAC
AAGGCAAGGGAGATAGAGAGCAACAATTTCATCTTTGGTTTGACCCTACTAAGGATTTCCACACCTACTCTATTCTTTGGAATCCTCGAA
ATATCATATTTTTGGTAGATGGGACACCAATAAGACAATACAAGAATCTTGAAGCAACAAATGGAATACCTTACCCAAAGAACCAACCAA
TGTGGTTATACTCAAGTTTATGGAATGCTGAGGAATGGGCAACAAGAGGTGGCCTTGTAAGGACTGATTGGAGTAAAGCCCCTTTTATTG
CTTCTTATAGAAACTTCAATGCCCAAACTTCCAAGAATCCCACAGCCAATTCTTGGTTAACTCAATCATTGGACAATGTTGGGTTAACAA
GGATGAAATGGGTGCAAAAGAACTATATGATATACAATTATTGCACTGATACTAAACGTTTCCCTCAAGGGTTCCCTCATGAATGCACTC
TAAATTAATAAGTTATTGTGTTAAAATATCCTCTATATTTATTTTTTCTTGCTAAATTGGAGTGATACGGTAAGAGTTGTTGTTGTGTGA
ATAAAGATATTATTATAGTTTCCAGTGGTGAAAGTCGAAACAACTTCTCGCAGAAATGGATATGATAAAGATGAGTGTGTATCAAAAGCT
TAATGTATTAAACTGTTATTTTTAAAAAAGTTCGTTCTTTATACTATAAAGAAATGTATATTAGCCCACTTGAGAGTGATATTGTTTGAT
TGTACTTATGAAATAAGTTTGAAATATTGTTTAAAAAAAAAAAATGTTCTTGTTATCTCAAAAGTATCTAGGGACACAAGTTATGCTTAT
CTATAATATATGGTACTCATAATTTAAATTACTATGTTCAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
xth2	xyloglucan endotransglucosylase-hydrolase 2	xyloglucan endotransglucosylase-hydrolase

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	10
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (42)

Alignment image suppressed for unigene with 42 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (10)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101462	Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Concanavalin A-like lectin/glucanase	129
2	118454	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122
5	128954	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122

Preceding Unigenes (1)

Unigene	Build
SGN-U215153	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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