Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564467 in the current build, Tomato 200607 #2

Unigene SGN-U315262

Unigene Basic Information

Unigene ID:	SGN-U315262
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315262
mRNA sequence:	Length: 1203 bp

>SGN-U315262 Tomato 200607 #1 (11 members)
GCAGGCAAGGGAGGACAAGACGAATATGAAGAGGCTACGGATGCAGACTGGGGTGAGTCATTGGACATCGGTGAGGTGGAAAATCTACAG
AATGGGGACATCAGTATGGTGCTTGGTGATGAGGAAGGACAAGAAGGAAATGATGAGGAGGAGGGAGGATGGGATCTTGAGGATCTGGAT
CTGCCTTCTGATGCAGACACACCTAAGACTACTTCCAATGCTCGTTCTTCTGTGTTTGTCACCCCAACACCTGGCATGCCTGTCAGCCAG
ATTTGGGTCCAAAAATCATCTCTAGCTGCTGAACATGCAGCTGCTGGAAATTTTGATACTGCTATGCGGTTGTTGAGTAGACAACTAGGG
ATTAGGAACTTCTCTCCTTTAAAATCACTGTTTATTGATCTTCATGTGGGTAGCCACACTCATCTGCTTGCCTTTTCCTCGGCGCCGGTC
ATCTCCGTGGCAATTGAGAGAGGTTGGAGTGAGTCAGCTAGTCCTAATGTTCGAGGTCCACCTGCTCTTATATTCAGTTTTGCTCAGTTG
GAGGAAAAACTTAAAGCTTCTTATAAAGCGACTACTGGTGGAAAATTTTCTGATGCACTTAGACTATTCCTGAGCATCCTTCACACCATT
CCTCTGATTGTGATTGAGTCGAGACGAGAAGTGGATGAAGTAAAGGAATTGATTGTCATAGTGAAAGAGTATGTTTTGGGTTTGCAGATG
GAGCTTAAGAGGAAGGAATTGAAAGACAATCCTATTCGCCAGCAGGAACTGGCAGCCTATTTCACTCACTGTAATCTGCAGCTTCCTCAC
TTGAGACTGGCGTTACAGAATGCTATGTCTATCTGCTACAAGGCCGGAAATCTTAGCTCAGCAGCGAACTTTGCTAGAAGACTCTTGGAG
ACCAATCCCACCAATGAAAGCCAAGCCAGAACAGCCCGCCAGGTTCTGCAAGCAGCTGAGAAAAATATGCGAGATGTTACACAGTTGAAT
TATGATTTCAGAAATCCTTTTACAGTGTGTGGGGCAACATATGTCCCGATATACCGGGGTCAGAAGGATGTCACTTGTCCTTACTGTGGT
ACTCATTTTGTACTGTCTCAGCAAGGGGGGCTTTGTACTGTTTGTGATCTTGCAGTTGTTGGAGCTGATGCCTCTGGTTTGCTTTGCTCG
GCATCACAGATCAGGTGATTTCAGCTTCTCATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101368	WD-40 repeat	806
2	119248	Coatomer WD associated region - Biological Process: intracellular protein transport (GO:0006886) - Molecular Function: protein transporter activity (GO:0008565) WD-40 repeat Coatomer alpha subunit C-terminal - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: COPI vesicle coat (GO:0030126)	18
5	129591	Coatomer WD associated region - Biological Process: intracellular protein transport (GO:0006886) - Molecular Function: protein transporter activity (GO:0008565) WD-40 repeat Coatomer alpha subunit C-terminal - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: COPI vesicle coat (GO:0030126)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U214658	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer