Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579725 and SGN-U592752 in the current build, Tomato 200607 #2

Unigene SGN-U315469

Unigene Basic Information

Unigene ID:	SGN-U315469
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315469
mRNA sequence:	Length: 1571 bp

>SGN-U315469 Tomato 200607 #1 (23 members)
GATTCTTCTTCTTCTTCTCTCCCACAAAAATTTGGGATTCAGAAATTGTAATTGGACGGAAAAGTTATGATGAGATTGTGTTATCGGCCG
TTGGAGAGGTGTTTTGGAAGGCGGAGTGGTGATGGACTTTTGTGGCATACAGATTTGAAGCCTCATGCATCTGGTGATTTTTCTATGGCT
GTTGTTCAGGCTAATTCATCTCTTGAAGATCAAAGTCAAGTACTTACTTCTCCTTCTGCTACCTATGTTGGTGTTTATGATGGTCATGGA
GGCCCTGAAGCTGCGCGTTTTCTTAATAGACATCTCTTTCCTTATTTAAACAAGTTTCAGAAAGAGCAAGGTTGTTTATCATCGGAGGTG
ATAAAGAGAGCATTTAATGCGACAGAAGAGGATTTTATTCGATTGGTGAAGCAATCACTGCCTTCTATGCCGAAGATTGCTTCAGTTGGA
TCATGTTGTTTGTTTGGTGCTATTTCGGGTAGTGAATTATATGTAGCTAATGCAGGAGACTCTAGGGCAGTGCTAGGACGCAGAGGTTTT
GACGGGGAGAAAAGTAAAGTGGTTGCAGAAAGGTTGTCCACTGATCATAATGTTTCATGTGAGGAGGTGCGGAAAGAGGTGGAATCACTT
CATCCTGATGATCCATCTATAGTGGTACACTGTCGAGGAGTTTGGAGAGTTAAAGGCATAATTCAGGTCTCAAGATCTATTGGAGATGCC
TATCTTAAGAGACCGGAGTTAAACAGAGATCCTATCTTTCAAAAATATGGAAATCCTGTTCCTTTGAAGCGGGCTGTAATGACTGCAGAA
CCTTCCATAGTTACTAGAAGAATTAGAACGCATGACTTATTTGTGATATTTGCTTCTGATGGCCTCTGGGAACAACTAAGTGATGAAGCT
GCTGTGGAAATAGTCTTTAGAAACCCAAGAGCTGGAATCGCTAAGAGACTGGTGGGAGCAGCCCTTAAGGAAGCTGGTAAGAAGAGGGAA
ATGAGGTACAAGGATATAAAGAAAATAGAGAAGGGAATTAGGCGTCATTTCCACGATGATATATCAGTGGTAGTGATCTATCTTGATCAG
CAGAAGAAGTCTTTCCAATCCAAAGGCAGCGCTGGCTGTATCTCTCCGCCTGTGGACATATCGTCGTATCATTCAGATGGTGTTGCAGAT
GAACCAAGTGGTTTGAGTCTCTTAAAACAGGCAATTTATTAATGGGTACAGTAGGATTATGGTAGTGAAAAATGATATGATGCGTGGAAA
GAATGCTGATTGTATTGTACATAAAATCACAGTTTTGGGTGGCTGGTTGAATGCATTGCCAGCAACAAGCTTTCAGTTTAGGAGCTGACC
AAATACATTTTTTTTCCAAACGGATTCTCCTCTTCATTTTTTTTACATATATATATAAAAAGATATATAGCTAAAAAAAAAAAAAAAAAA
TTTTGAGTTAGAATAGGTCTTTTATTAATCACTTATGATCCTCCAAAATTTCTGTGAGACCTGGCTCTGTACATTTCCAGATTTACGTTA
TACATATTTCTAAGTATTATAATTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101395	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	322
2	118609	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	44
5	129092	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	43

Preceding Unigenes (1)

Unigene	Build
SGN-U215103	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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