Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581695 in the current build, Tomato 200607 #2

Unigene SGN-U315568

Unigene Basic Information

Unigene ID:	SGN-U315568
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315568
mRNA sequence:	Length: 3297 bp

>SGN-U315568 Tomato 200607 #1 (39 members)
GGCACGAGAAACCTCTTCTTTCTCTCTCTATATCTCTATATATAAATATATGGGTTGTAATGGCAGTCTCTTTTTCTCTACTAATACTAG
TACAAGACACTTGCGTATTTTAATTTTTTCAGAATATTAGAAGTTTCATTAGTAAGAATACTGAGAGTTTTTTTTTTGTTGTTGAAAAAA
GGGAAGTGATGAAGTGAAAACCCGGATTTGCCCCTTAATCACCTCTAGTTTTGTGGTGGTCGGGGTGGGGGTTGGTGCCGGAGATCGGAA
AAAACTGAAAACAGGTTGCAATGTGGTGGCGGTTTATTTAATCAGGTTGTGGGTGCATTGGGTTTTTGGTTAATTTGGGTTTGTTGATGA
TACCAATGCATGTGAGGGGAAATGGAGTTTCGGATAAGAAGAAGATGATGCCTATTCTTGGGATCTGCATGTGGGGGAACCATAAGATCT
CAGTATTGGATTGGTTTTGCTCTCCAAGAGAGGATGTCTATATTTATTCTTTCTTCTGGTTTATGATTAGCGTTGGTGCTGAAATAATGA
TTTAATATAGTAAATGGGCTGAAGACGACTTGCTCAATGTTGAGGACGTTAGCATCAGCTTTGTTGGTTTTGTCCTTCTTTGTTTCCTTA
TCGGCTGCTGATAATGGTTTCCCGCGATGTAACTGTGATGATGAGGGATTTTGGAGCATTGAGAGTATCTTAGAGTGCCAAAAGATTAGT
GATCTCTTTATTGCGATTGCGTATTTTTCCATCCCAATTGAGCTCCTTTACTTTGTCAGTTGTTCTAACTTTCCATTCAAATGGGTGCTC
TTCCAATTTATTGCATTCATTGTTCTGTGTGGGATGACTCATTTGCTCAATTTCTGGACTTACTATGGCCAACACCCGTTTCAGCTTATG
CTTGCTTTAACCATTTTTAAAGTCCTCACTGCACTGGTATCCTTCGCCACGGCTATAACCCTTATTACCCTCTTTCCTATGCTGCTTAAA
GTCAAGGTGAGGGAATTTATGCTGAAAAAGAAGACTTGGGATCTTGGTAGAGAAGTTGGATTAATAAAGATGCAAAAAGAAGCTGGATGG
CATGTTCGGATGCTTACACAGGAGATTCGAAAGTCACTTGACCGTCATACAATACTCTACACAACTCTGGTGGAGCTATCAAAGACGCTG
GATTTGCATAACTGTGCTGTTTGGAAGCCCAATGAGAATAAAACTGAGATGAACCTAATTCATGAGCTGAGAGACAGTAGCTTTAATAGC
GCGTATAATTTACCTATCCCGAGAAGTGATCCAGATGTTATACAGGTTAAGGAGAGTGACGGAGTAAAGATACTTGATGCCGACTCCCCA
CTTGCTGTTGCGAGTAGTGGAGGGAGTAGGGAACCAGGAGCTGTGGCTGCAATTAGGATGCCGATGCTTAAAGTGTCGAACTTCAAAGGT
GGAACTCCTGAACTTGTCCCAGAATGTTATGCCATACTGGTTTTGGTTCTACCTAGTGAACAAGGTAGATCATGGTGCAGCCAGGAAATT
GAGATAGTCAGGGTTGTGGCTGATCAGGTTGCTGTGGCTCTGTCCCATGCTGCAATTCTTGAAGAGTCTCAGCATATGAGAGAAACATTG
GAAGAGCAAAACCGAGCTCTGGAACAAGCAAAGCAGGATGCACTTAGGGCGAGTCAAGCAAGGAATGCATTTCAGATGGTTATGAGCCAT
GGTCTGAGAAGACCCATGCACTCAATATTGGGTCTGCTCTCCTTGTTGCAAGATGAGAAATTGGGTAATGAGCAGCGGCTTCTTGTGGAT
TCAATGGTTAAAACCAGTAATGTCGTGTCAACCCTAATAGATGATGTGATGGATACTTCAACAAAGGACAACGGTAGATTCCCTTTGGAG
ATGAGATATTTTCAGCTACATTCCATGATAAAAGAAGCTGCTTGTCTTGCCAAGTGTTTGTGTGCTTATAGGGGTTATAATATTTCCATT
GAGGTTGACAAATCTTTGCCAAATCATGTTCTCGGTGATGAAAGAAGAGTTTTTCAAGTTATTCTTCATATGGTTGGAAATCTTTTGAAG
GACCCCAATGGAGGTCTTCTCACATTTAGGGTTCTCCCAGAAAGTGTAAGTAGGGAAGGCATTGGTGGAGCATGGAGAACAAGGAGGTCA
AACTCATCTCGTGATAACGCCTATATCAGGTTTGAAGTTGGAACAAGCAATAATCATTCTCAGCCAGAGGGGACCATGTTGCCACATTAC
AGGCCAAAACGCTGCAGTAAGGAGATGGATGAAGGCTTGAGTTTCACTGTGTGCAGAAAGCTGGTTCAGTTGATGCAAGGAGACATCTGG
GTAATCCCAAATCCAGAAGGTTTTGATCAAAGCATGGCTGTCGTTCTTGGGCTTCAACTGCGGCCATCAATTGCCATAGGCATTCCTGAA
TATGGGGAATCTTCTGATCATTCGCATCCACACTCACTCCTCCAAGGTGTTAAAGTTCTGTTAGCAGATTATGATGACGTGAATAGAGCG
GTAACAAGTAAGCTACTTGAAAAATTGGGATGCAGTGTTTCTGCAGTTTCATCTGGACGTGACTGTATTGGTGTTCTTAGCCCTGCTGTA
TCCTCATTCCAAATCGTCCTTTTGGATCTTCACCTGCCTGATTTGGATGGCTTCGAAGTAACCATGAGAATTCGGAAGTTTGGTAGCCAC
AACTGGCCATTGATAGTTGGTTTAACTGCGACTGCTGATGAAAATGTTACTGGAAGATGCCTGCAGATTGGAATGAATGGACTTATTCGT
AAACCAGTGCTATTGCCAGGTATCGCTGATGAGCTTCAAAGGGTTCTGCTACGGGGAAGTAGAATGATGTAATTGATGTTGACGGTGCCT
TATAGGAGTGGAGTTTATAAGGCAGGGCTTCATCAACCACGTAATGCTAGATGTTCAAACGAAATTGCTTGGACCACTTCCCACCCCTGA
AGATTCCAGCATACAGATGTAACGTACATACAATCTTTGAAATCAAAATGGTACAGAAAATATATCGTCTTTTCTACTCTCATAAAAGCC
CTCAGCTCTAAAGGATTTGAGCCAGGTTTGCCGATTCTACATGTTATTGAGCTTAGCAACTCAGAATATTTAACTAATCTGTTGTTAGAA
CTGAAAAGTATATACTGTTGAGAAATGACTCCAGAATAGCTCCATTTCTAAGTGTTCTGGAGCACTATTAGATTTGCATTTGCAGGAATA
TTTATTGCCAATTGAAAATTTTGGGTGGAAAAAAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
etr4	ethylene receptor homolog (ETR4)	ethylene receptor

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 5 | blast: 2 | go: 9 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P244774 (773 Aa)

FNIVNGLKTTCSMLRTLASALLVLSFFVSLSAADNGFPRCNCDDEGFWSIESILECQKISDLFIAIAYFSIPIELLYFVSCSNFPFKWVL
FQFIAFIVLCGMTHLLNFWTYYGQHPFQLMLALTIFKVLTALVSFATAITLITLFPMLLKVKVREFMLKKKTWDLGREVGLIKMQKEAGW
HVRMLTQEIRKSLDRHTILYTTLVELSKTLDLHNCAVWKPNENKTEMNLIHELRDSSFNSAYNLPIPRSDPDVIQVKESDGVKILDADSP
LAVASSGGSREPGAVAAIRMPMLKVSNFKGGTPELVPECYAILVLVLPSEQGRSWCSQEIEIVRVVADQVAVALSHAAILEESQHMRETL
EEQNRALEQAKQDALRASQARNAFQMVMSHGLRRPMHSILGLLSLLQDEKLGNEQRLLVDSMVKTSNVVSTLIDDVMDTSTKDNGRFPLE
MRYFQLHSMIKEAACLAKCLCAYRGYNISIEVDKSLPNHVLGDERRVFQVILHMVGNLLKDPNGGLLTFRVLPESVSREGIGGAWRTRRS
NSSRDNAYIRFEVGTSNNHSQPEGTMLPHYRPKRCSKEMDEGLSFTVCRKLVQLMQGDIWVIPNPEGFDQSMAVVLGLQLRPSIAIGIPE
YGESSDHSHPHSLLQGVKVLLADYDDVNRAVTSKLLEKLGCSVSAVSSGRDCIGVLSPAVSSFQIVLLDLHLPDLDGFEVTMRIRKFGSH
NWPLIVGLTATADENVTGRCLQIGMNGLIRKPVLLPGIADELQRVLLRGSRMM

SignalP predicts secretion with a score of 0.829

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P118363 (921 Aa)

MHVRGNGVSDKKKMMPILGICMWGNHKISVLDWFCSPREDVYIYSFFWFMISVGAEIMINIVNGLKTTCSMLRTLASALLVLSFFVSLSA
ADNGFPRCNCDDEGFWSIESILECQKISDLFIAIAYFSIPIELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNFWTYYGQHPFQLMLA
LTIFKVLTALVSFATAITLITLFPMLLKVKVREFMLKKKTWDLGREVGLIKMQKEAGWHVRMLTQEIRKSLDRHTILYTTLVELSKTLDL
HNCAVWKPNENKTEMNLIHELRDSSFNSAYNLPIPRSDPDVIQVKESDGVKILDADSPLAVASSGGSREPGAVAAIRMPMLKVSNFKGGT
PELVPECYAILVLVLPSEQGRSWCSQEIEIVRVVADQVAVALSHAAILEESQHMRETLEEQNRALEQAKQDALRASQARNAFQMVMSHGL
RRPMHSILGLLSLLQDEKLGNEQRLLVDSMVKTSNVVSTLIDDVMDTSTKDNGRFPLEMRYFQLHSMIKEAACLAKCLCAYRGYNISIEV
DKSLPNHVLGDERRVFQVILHMVGNLLKDPNGGLLTFRVLPESVSREGIGGAWRTRRSNSSRDNAYIRFEVGTSNNHSQPEGTMLPHYRP
KRCSKEMDEGLSFTVCRKLVQLMQGDIWVIPNPEGFDQSMAVVLGLQLRPSIAIGIPEYGESSDHSHPHSLLQGVKVLLADYDDVNRAVT
SKLLEKLGCSVSAVSSGRDCIGVLSPAVSSFQIVLLDLHLPDLDGFEVTMRIRKFGSHNWPLIVGLTATADENVTGRCLQIGMNGLIRKP
VLLPGIADELQRVLLRGSRXDVIDVDGALWSGVYKAGLHQPLMLDVQTKLLGPLPTPEDSSXTDVTYIQSLKSKWYRKYIVFSTLIKALS
SKGFEPGFRFYMLLSLATQNI

SignalP predicts non-secretion with a score of 0.081

IPR003018 GAF
IPR003661 Histidine kinase A, N-terminal
IPR001093 IMP dehydrogenase/GMP reductase
IPR003594 ATP-binding region, ATPase-like
IPR001789 Response regulator receiver

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	118740	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	32
5	129698	GAF Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020)	16

Preceding Unigenes (2)

Unigene	Build
SGN-U214885	Lycopersicon Combined #3
SGN-U236227	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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