Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578508 and SGN-U579059 in the current build, Tomato 200607 #2

Unigene SGN-U315727

Unigene Basic Information

Unigene ID:	SGN-U315727
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315727
mRNA sequence:	Length: 1208 bp

>SGN-U315727 Tomato 200607 #1 (35 members)
TAAGTTATAATATAATATTGTTCATAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTC
TCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTC
ATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGC
CAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAAC
AATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAG
TCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCT
AGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCT
TTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGG
AGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGA
GTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTT
TTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAA
ATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCC
TTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAAT
AAACTTATGAAATTTTACGAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128926	Leucine-rich repeat	647

Preceding Unigenes (2)

Unigene	Build
SGN-U215372	Lycopersicon Combined #3
SGN-U215373	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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