Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566380 in the current build, Tomato 200607 #2

Unigene SGN-U315851

Unigene Basic Information

Unigene ID:	SGN-U315851
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315851
mRNA sequence:	Length: 2534 bp

>SGN-U315851 Tomato 200607 #1 (34 members)
GAAGGCAATTTATGCATGTCCTTTTTCTACAATATATCAAAAATAAATACTTAATTGAGATATTTGGGTATTTCTCCTTGGCCCTGCTTT
GAGGTTTCGCCAGGATTCTCTCACAGAGCCGCCTCACACTGTACCCGCAACCCGGTCCACAACCCATTTTCCCTTTCATTCCGGTTCATC
TTCTCCATCACCGGCAGAAGGCGGAAAGTGGAGAACGAAGATGACTGAAGTCGCGAGCAACGTTGTACACGAAATCCTAGGCGGACGAGC
TCAAGATGTAGATCAGCCTATTATCGACTATATTATCAATGTCGTCGCCGATGAAGATTTCGATTTTGGTCACGACGGTGAAGGTGCTTT
TGAAGCCCTTGGAGAGCTACTTGTCGATTCCGGTTGTGTTACTGACTTCTCCGAATGTCGTGCGGTTTGTAGCAAGTTGTCTGAGAAGTT
AGAGAAGCATGAATTGGCTAAACCCCAACCGACGGTGAGAAGCTTAAAAATGCCGCTGAGAATGTTTGATGGAATGGATGAAGAGGAAGC
TCCAAAGAATAAAAAGCCAGAACCAGTTGATGGTCCTTTGCTCACAGAACGTGACAAGATTAAGATTGAAAGAAGGAAGAGGAAAGAGGA
ACGCCTGAGAGAGGCAGAATACCAAGAACACTTGAAAGAAGTGGAGGAAGTGAAAGCTGGTATGCCTTTAGTGTGTGTGAATCATGATGG
TCAGGGTGATGGACCAACTGTTAAGGATATCCGTATGGAGAACTTCAATATATCTGTCGGTGGTCGTGAACTTATTGTCGATGGTTCTGT
CACGCTTTCTTTTGGAAGACACTACGGTCTTATTGGAAGAAACGGTACAGGGAAAACAACTCTCCTGAGGCATATGGCTATGCACGCTAT
TGATGGTATTCCCAGGAACTGCCAGATATTGCATGTTGAGCAAGAAGTGGTTGGTGATAATACCTCAGTTTTGCAATGTATTCTTAACAC
TGATATGGAGAGAACCCAACTTCTGGAAGAAGAGGCTCGTCTGCTTGAATTACAGAGAGTGACCGACTTAGAAGGCGAATCTGCAAAGAG
TGATAAGTTGAATGGAGGTATCGACAAAAATTCGCAAGCAAAAAGGCTTGAAGAGATATACAAAAGACTTGATTTCATTGATGCTTACTC
GGCTGAGTCACGTGCAGCAACTATACTATCGGGTTTGAGCTTCTCTCCAGAAATGCAAAAGAGAGCAACCAAAACATTTTCTGGAGGATG
GAGAATGAGAATCGCTCTTGCTCGGGCATTGTTCATTGAACCTGATCTATTGTTGCTTGATGAACCCACGAATCATCTTGATCTGCATGC
TGTCTTATGGCTGGAAAGTTACCTGGTGAAGTGGCCGAAGACATTTATAGTTGTGTCTCATGCTAGAGAGTTCTTGAATTCTGTAGTCAC
AGATATCATCCATCTACAAAATCAGAAATTGAGCACCTTTAAAGGAGACTATGATACATTTGAAAGGACACGAGAAGAACAAGTTAAGAA
TCAACAGAAAGCATTCGAGGCAAATGAACGTACAAGGGCCCACATGCAGACCTTTATTGACAAGTTCAGGTACAATGCAAAGCGTGCATC
TCTTGTTCAGTCTAGAATTAAGGCACTGGAACGAATTGGTCGTGTGGATGAAGTCATCAATGATCCTGACTACAAGTTTGAGTTCCCTTC
TCCTGATGATAGACCTGGCGCTCCTATTATAAGCTTCAGTGACGCATCCTTTGGATATCCTGGGGGACCAATATTGTTCAAAAATTTGAA
TTTTGGAATAGATTTGGATAGCAGAGTAGCAATGGTTGGTCCTAATGGTATTGGAAAGTCAACAATACTTAAGCTTATTTCTGGGGAGCT
TCAACCAACCTCAGGGACTGTTTTCCGCTCTGCTAAGGTCCGTATTGCTGTATTTAGTCAGCATCATGTTGATGGGCTGGATCTGTCCTC
AAATCCCCTCTTATACATGATGCGTTGCTTTCCAGGAGTGCCTGAACAAAAATTACGTGGTCATCTAGGTTCATTTGGTATAACCGGAAA
TCTTGCTCTTCAGCCCATGTACACTTTATCTGGTGGCCAAAAAAGCAGAGTTGCATTTGCAAAGATAACTTTCAAGAAACCTCACATATT
GCTTCTTGATGAGCCGTCAAATCACTTGGATCTGGACGCTGTGGAAGCCTTGATACAAGGTCTTGTCTTGTTCCAAGGAGGCGTCCTGAT
GGTCAGTCACGATGAACATTTAATATCTGGCAGTGTTGATCAACTCTGGGCTGTCTCTGAGGGCAGAGTGACGCCTTTTGACGGGACATT
CCAAGATTACAAGAAAATATTGCAATCATAAACACTTCTGCTGCTTTCTGAAGTGAACGAACTATAATTAGTTACTTATGGCCTAAACCC
CTACTTTTATGCAGAGACCACATGTTCGATGTAAAATTTCGAAACCAAATTCTGAAGAATGTTCTAAAACAAATAGTGATTTTCTACTCC
TAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	3
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118764	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	31
5	130892	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	8

Preceding Unigenes (2)

Unigene	Build
SGN-U217284	Lycopersicon Combined #3
SGN-U218132	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer