Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571503 in the current build, Tomato 200607 #2

Unigene SGN-U315852

Unigene Basic Information

Unigene ID:	SGN-U315852
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315852
mRNA sequence:	Length: 2261 bp

>SGN-U315852 Tomato 200607 #1 (31 members)
AATTCCCCACTAATATTATAACTTATCAATGCTATATGATAACCCCTATATAGTCTTTACATAAATACAAATATAAAACTCAGCAGCCAT
TTCACCATTCCACTACCACACTTTCTTCTGTTTTTTGAAAAAGCCATATCTGTGACCACCACACTTACACTCACAATTAATCCATGGATT
GCCAATTAGGAGTGCAGGGCCATGGCTTCGGTAATGCCAGAACTCCTTTGTTAGACAGACCTGCTTTAGGGAGAAAGAGAAATGATGCTG
GAGATGGTCAGTTGGGAGACCTTGAGCATGGTGATTCTGTTCCGGCACCAAATGTTGGATTTGGCAGAGTTATTTCACTTGCGAAGCCTG
AAGCAGGAAGTTTGGTATTGGCGACAATTGCTTTGCTGTTTGCAGCAACATCAAGCATTTTGATTCCAAAATTTGGGGGAAAGATAATTG
ATATTGTTTCAGGTGATATCCAAACACCTGAACAGAAATCAGAAGCTTTAAATGCAGTCAAGAACACAATACTTGAAATCTTTCTGATTG
TCATTGTTGGTTCTGTTTGCACAGCACTTCGAGCATGGTTATTCTCTTCTGCTAGTGAAAGGGTTGTAGCCAGGTTGAGAAAGAACTTGC
TAAGTCACCTTGTTCACCAGGAGATAGCTTTCTTCGATGTTACTCGAACTGGGGAGCTCCTCAGTAGGCTATCTGAAGATACCCAGATCA
TAAAGAATGCCGCAACTACTAATCTTTCAGAGGCTTTGAGGAATCTTGCTACTGCATTTATTGGTCTTGGATTTATGTTTCAAACATCAT
GGAAATTAACATTGTTGTCGCTAGCTGTTGTACCAGTCATATCAGTTGCAGTACGCAGATTTGGTCGCTACATGCGTGAGCTTTCCCACA
AAACTCAAGCTGCTGCAGCAGTAGCCTCGTCCATTGCTGAGGAAACTTTTGGCGCCATACGGACAGTGAGATCATTTGCGCAGGAAGATT
ATGAGATTTCACGCTATTCGGAGAAAGTTGACGAGACCTTAAATCTTGGGCTTGGACAAGCTAAAGTGGTTGGCCTTTTCTCTGGAAGCT
TAAGTGCTGCATCTACTCTATCAGTTATTGTAGTAGTAATATATGGAGCCACTCTGACTATCCAAGGCGCGATGACACCTGGAGCTCTTA
CATCCTTTATACTCTATAGCTTAACAGTTGGATCATCCGTATCTGGACTTTCTGGATTATATACTGTAGCAATGAAAGCTGCTGGAGCCA
GCAGACGGGTTTTTCAGATCTTGGATCGCACATCATCCATGCCAAAATCAGGAGACCTATGTCCAATGGGTGATCAAGCTGCAGAGGTAG
AACTGGATGATGTCTGGTTTGCCTATCCATCCCGTCCTAGCCACATGGTCCTCAAGGGTATAACAATGAAGCTACAATCTGGTTCAAAGG
TTGCACTGGTTGGTCCAAGTGGTGGTGGAAAGACTACAATAGCAAATTTGATAGAGAGATTCTATGATCCTGTTAAAGGGAAGATCTTGC
TCAATGGGGTTTCTCTGGTTGAAATATCTCATAAGCACCTACACCATAAGGTTAGTATAGTGAGCCAGGAACCTGTTCTTTTCAACTGTT
CCATTGAAGAAAATATTGCCTATGGATTGGGCGGCAAAGCAAGCAGTGAAGATATAGAAAAAGCAGCTAAAATGGCCAATGCTCATGAAT
TTGTATCCAAATTTCCCGAAAAATATCAAACCCATGTCGGAGAACGAGGATTAAGACTTTCTGGTGGTCAGAAACAGAGAATAGCCATAG
CTAGAGCACTACTGATGAACCCTACAATTTTATTGTTGGACGAGGCCACGAGTGCTCTGGATGCTGAAAGTGAATATCTAGTTCAGGATG
CCATGGATTCCCTGATGCAAGGTAGAACCGTTCTTGTCATAGCTCACAGGCTTTCAACAGTCAAGAGCGCGAACACTGTAGCTGTTATTT
CGGATGGTCAAATAGTGGAAAGTGGCACACATGATGACCTTCTGAACAAGAATGGGATCTATACAGCACTTGTGAGGAGGCAGTTGCAGG
GATACAAATCTGATAGCTAATTTTTATCTTTGTTCAAAAACACCTGAGAAACTAAGTTAGCAAACCACAAATGTTCAATGTACTTGTATT
ATTATTATTCACATATAGAAAGTGTAAAAATAAGGAACAGCCATCATCATTCCTCCATAAATGACAGATTTTGTGACAGTAGTTCGAAAT
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118516	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	69
5	129012	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	67

Preceding Unigenes (2)

Unigene	Build
SGN-U214603	Lycopersicon Combined #3
SGN-U214604	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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