Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579020 and SGN-U591585 in the current build, Tomato 200607 #2

Unigene SGN-U315905

Unigene Basic Information

Unigene ID:	SGN-U315905
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315905
mRNA sequence:	Length: 1496 bp

>SGN-U315905 Tomato 200607 #1 (33 members)
TAGTGATGAGGGATGCAGATGGAAAATCCAAGGGCTTTGGGTTTGTCAATTTTGAGAATGCAGATGATGCTGCTAAGGCTGTTGAAGCAT
TAAATGGAAAGAAATTTGACGAAAAAGAATGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAGCAAGAATTGAAAAACAAGTTTG
AGCAAACTGCCAAGGAGGCTGTTGATAAATACCAAGGTGTTAATTTGTATGTAAAAAATTTGGATGACACCATTGATGATGAAAAGCTCA
AGGAACTTTTTGCCGAGTTTGGTACTATTACCTCATGCAAGGTTATGCGGGATCCAAGTGGAATCAGCAGGGGGTCTGGGTTTGTTGCTT
TCTCTACTCCTGAAGAAGCTTCCAGAGCTCTTTCTGAGATGAACGGCAAAATGATAGTGAGCAAGCCACTCTATGTTGCACTAGCACAGC
GGAAAGAGGAGAGAAGGGCAAAGTTGCAGGCACAATTTTCACAACTGCGACCAGTGGCAATGCCTCCATCACTTGCTCCTCGCATGCCAA
TTTACCCTCCTGGTGCTCCTGGGATTGGACAGCAACTATTTTATGGGCAAGGACCCCCTGCTCTAATTCCTCCCCAGGCTGGGTTTGGCT
ATCAACAACAGCTTGTTCCTGGAATGCGCCCTGGAGGAGCCCCTATGCCAAACTTCTTCATGCCGATGGTCCAGCAAGGACAACAGGGTC
AGCGCCCAGGTGGTCGACGAGGAGCAGGACCTGTGCAACAATCTCAACAGCCTATGCCCTTGATGCAGCAGCAGATGATGCCAAGAGGAA
GAATGTACCGCTATCCACCTGGACGCAATGTGCCAGATGGGCCAATGCCAGGTGTTGCTGGTGGTATGCTCTCTGTTCCATATGATATGG
GTGGTATGCTTCCTCGTGATGCTGCTGCTATGGGACAGCCTGTGCCGATCTCTACATTGGCTACTGCCCTTGCAAATGCTCCACCTGAGC
AGCAGAGGACGATGTTGGGTGAAAGTTTGTACCCACTTGTTGATCAGCTAGAGCACGAGCATGCTGCCAAGGTTACGGGCATGCTCCTTG
AAATGGACCAGACCGAGGTTTTGCATCTGCTTGAATCACCGGAGGCTTTGAAGGCTAAAGTTTCCGAGGCTATGGATGTGCTGAGGAATG
TTCAGCAGGCAACCAGCAGCCCGGCTGACCAACTTGCATCTCTTTCCCTTAATGACAACCTTGTTTCTTAGTGAAGTCCAAGTGAATGCC
GAATGCGGTGTTTTTTGATGGATGATCTCCTCTGTAGTGAGGATAAAACAGATTTTGCAGGGATGAGTTTTGAAAAACTGCTAGGGTTTT
ACTATCTCAGGATGTTTTATCTTGGATATGAATTTTTTTTTCCTTCTGGATTCTTAAGATTATGTTTTATGTTATGTGGTCTCAGGTTTT
TAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCGGGGGGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118573	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	50
5	129237	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	29

Preceding Unigenes (1)

Unigene	Build
SGN-U215198	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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