Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580836 in the current build, Tomato 200607 #2

Unigene SGN-U315963

Unigene Basic Information

Unigene ID:	SGN-U315963
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315963
mRNA sequence:	Length: 1183 bp

>SGN-U315963 Tomato 200607 #1 (33 members)
ACTTGCTGGCCTATACCTTTGTCCCTTATTTTGCTTGCCACCTTGTGTCTACTACTCTTGGAAGCTGAGTGTGTGTTCATCTTCAACACA
AGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGAC
AAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAGAAGGCTTCCTTTGTTGTAAGGGCTACTGCCACTCCACCTGTTAAGCAAGGAG
CAAATAGGCCTCTCTGGTTTGCCTCCAAGCAGAGCCTTTCATACTTAGATGGCAGCCTTCCTGGTGATTATGGATTTGATCCCCTGGGAC
TGTCAGACCCTGAAGGTACTGGAGGTTTCATTGAACCAAAATGGCTAGCATATGGAGAGGTCATCAATGGAAGATTTGCTATGTTGGGAG
TAGTAGGAGCCATTGCGCCCGAGATTCTTGGAAAGGCTGGTCTCATCCCACCAGAGACGGCCCTTCCATGGTTCCAAACAGGAGTGATTC
CTCCAGCTGGAACATACAACTATTGGGCAGACGGCTACACACTATTTGTACTGGAGATGGCACTCATGGGATTTGCTGAACACAGAAGAT
TCCAGGACTGGGCCAAGCCAGGTTCTATGGGTAAACAATACTTTTTGGGACTAGAGAAAGGCTTGGGAGGTTCTGGAGACCCAGCATACC
CAGGTGGACCTTTCTTTAACCCTCTCGGGTTCGGAAAAGATGAGAAGTCTATGAAGGACTTAAAGCTAAAGGAGATTAAGAATGGAAGAC
TAGCTATGTTGGGTATCTTAGGTTACTTCATTCAAGGTTTGGTAACTGGAGTTGGACCTTACCAAAACCTCCTTGACCATTTGGCTGACC
CTGCAAACAACAATGTCTTGACCAGCCTCAAGTTCCACTAAACAAGGAGCAAATCACCCTGTTTTAGCTACCCTGATCTGATATGTAAAC
ATTATGTGCAGATATTATTTTGCATATCATTGTAATCAGCTAAAAAGGACATGTCAACAAAAACCTGTTTTTCCTGAGTTTTAGCTGTTA
GCTTCCTGCTGCAGTTTCTGCAGCATTCTTTAGGATCATGTGTAAACTCAATTCTCTAAGACAAAAAAAAGAGCAAATACTGGATTAAAC
ATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	9
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	118429	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	201
5	128943	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	163

Preceding Unigenes (1)

Unigene	Build
SGN-U216905	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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