Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581990 in the current build, Tomato 200607 #2

Unigene SGN-U315984

Unigene Basic Information

Unigene ID:	SGN-U315984
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315984
mRNA sequence:	Length: 2006 bp

>SGN-U315984 Tomato 200607 #1 (30 members)
AAAAGATCAAAGCAAAATAACGAAGTCATAATTTTGTTATTCAAGTTCAATCCAACATGGTTGAGCATGATTTTCATCAACAAACTCAAA
GTTTAGTTAAGTTGGTGGTACTTGTATGTTTGTTATTTCTATCTGCTAGTATTTCAGTTGAAGCGCGAATTCGTCATTATCAATGGGAAG
TTAAATATGAATATAAATCCCCAGATTGTTTCAAAAAACTCTCTATTAGCATCAATGGTAAAACTCCAGGACCTACTATTGTTGCTCAAC
AAGGTGACACTGTTGTTGTTGAAGTTAAAAATAGCTTGTTAACTGAAAATCTTGCTATTCATTGGCATGGAATTAGACAGATTGGAACAC
CATGGGCTGATGGAACAGAAGGAGTGACACAATGTCCTATTGTGCCAGGGGATACTTTTATATACAAATTTGTTGTTGATAGGGCTGGAA
CATATTTGTACCATGCTCATTATGGTATGCAAAGACAAGCAGGACTACAAGGAATGATGAGAGTATCATTACCTGATGGAGTTTTAGAGC
CATTTTCATATGATCATGATAGGAGTATTCTTCTCACTGATTGGTACCACAAGAGCACTTATGAACAAGCAACTGGTCTTGCTTCATTGC
CTTTTTCTTGGGTTGGAGAACCTCAGTCAATCTTGATTCATGGAAGAGGAAGATTCAATTGTTCTATTCCGACCATAGATCCTACTCTTT
GTAATGCTACAAATCCTCAATGTACACCTTATTCAATGACTGTGGTTCCTGGCAAGACTTATAGGCTTAGAATTGGCAGCTTGACTGCTC
TTTCAGCTCTAAGTTTTGAAATTGAGGGGCATAACATGACAGTTGTTGAGGCAGACGGTCACTATGTGGAGCCATTTGTGGTAAAAAATC
TGTTCATTTATTCTGGAGAAACATACTCAGTCCTAATTAAAGCTGATCAAGACCCTACAAGAAATTATTGGGCAAGTACAAAAGTTGTCA
GCAGGAATAATACTACTCCAAATGGTTTGGGTATTTTCAATTATTACCCAAACCATCCTAGGAGATATCCTCCTACTGTACCACCCTCGG
GGCCACGTTGGGATGACGTTGCCCCCAGGATGGCTCAGAGTGTTGCTATCAAGTCCCACAGAGATTTCATCCATGCCCCTCCTCTGACAT
CGGACAGGGTCATAGTCATGCTCAACACACAAAATAGGGTGAACGGGTATGTACGTTGGTCAGTCAACAACGTCTCATTCAACATGCCCC
ATACGCCTTACCTGATCGCCCTTAAACACAACTTGTTACATGCTTTCGAGCAAACCCCTCCTCCGGACAACTATGACCAAAAGAATTACG
ACATCTTCAATATCGCGCCAAATGTGAATGCTACAACTAGCAACTCGATTTATCGATTGAAGTTCAACACAACAGTGGACATCATATTGC
AAAATGCCAACACAATGAACCTAAACAACAGTGAGACACATCCTTGGCATTTACATGGACATGACTTTTGGGTCATGGGCTATGGTAATG
GCAAGTTTAACCAATCTATTGATCCAAAGAATTACAACTTTGTGAACCCAATAATGAAAAACACAATCCCAGTCCATCCTTATGGATGGA
CCGCATTGCGATTTCGGGCCGATAATCCAGGAGTTTGGGCCTTCCATTGCCATATTGAGTCACATTTCTTCATGGGAATGGGAGTTGTAT
TTGAAGAAGGAATTGAGAAAGTTGGCAAATTGCCTACTTCTATTATGGGCTGTGGAGAAAGTAAAAGGTTCCACAGGCCTTAAATTCTAT
AACATTATTGTCCAAAACAGATTACTTTGGTTTAATATTATTTTGATTCTTTTGATAGTTGCCAAAAATCAAAGGCCAGTAAAAAATGTG
TTCCTTTTTGTTGTAAAACCTCTACACTGTAAAAAAAAATAAAAATAAAATTCACTCTTTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACTCGAGACTAGTTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ao	ascorbate oxidase	ascorbate oxidase

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	21
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 3 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118582	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	49
5	129041	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	54

Preceding Unigenes (1)

Unigene	Build
SGN-U214702	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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