Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567628 in the current build, Tomato 200607 #2

Unigene SGN-U316042

Unigene Basic Information

Unigene ID:	SGN-U316042
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316042
mRNA sequence:	Length: 2151 bp

>SGN-U316042 Tomato 200607 #1 (20 members)
TTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGT
TTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAAT
CTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTAT
CAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGA
TCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGC
CCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGG
GGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACT
AAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTAT
GAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAA
AGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAA
AACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAGGTAAGTCGTAC
AAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTT
ATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGAC
TTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACA
GCTGCACAGGTTCTTGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAG
CAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCA
ATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACC
GAGGCTGAAGTCAAGCAATTGATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCAT
AAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTTCATTACAAGAGATGAACTC
GAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGATGGAAGAATC
AATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTT
GTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTA
CATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATC
AGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cdpk1	alcium-dependent protein kinase 1	alcium-dependent protein kinase

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128946	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	159

Preceding Unigenes (1)

Unigene	Build
SGN-U214964	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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