Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579749 in the current build, Tomato 200607 #2

Unigene SGN-U316052

Unigene Basic Information

Unigene ID:	SGN-U316052
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316052
mRNA sequence:	Length: 1115 bp

>SGN-U316052 Tomato 200607 #1 (30 members)
CTATATACAGCTCTCTTATTTCACTTTCTCCTTATATATTACAGCAAGCTACCATTTAGCATCTTCAAACCAATCTTGGAGAAGAAAAAT
CATCAGTTTTGGAGAAGGAAACTTGAATTGCAATCCAATTTTGTGAAAAAGAAAAATGGAGTGTGTTTTGGCTCATGAGAAAGATTTGAA
TCTCAAGGCAACAGAGCTTAGATTGGGTTTACCAGGGAGGACAGATGAAGAATCTGACAAAGAAATTGTATTTCATTTCAAGAATAACAA
GAGGGCTTTGCCTGAGGATGAAGATTGTGAATCAAACTCCATTTCAGATCCCAAAACTCCACCTGTTGCCAAGACACAAATAGTAGGGTG
GCCACCAGTAAGAGCTAACAGGAAAAATAGCTTTCCATCAAAGAAAGCAGAAGCTGAATGTGGGATGTATGTGAAAGTTAGTATGGATGG
AGCCCCTTATCTTAGAAAAATTGATCTGAAATTGTACAAGGGTTATCCAGAACTGTTGAAGGCATTAGAGAAAATGTTCAAGCTGAGTAT
CGGTGAATATTCAGAAAGGGAAGGGTATAAAGGGTCTGAATTTGCTCCTGCTTATGAAGATAAAGATGGTGACTTGATGCTTGTTGGAGA
TGTTCCTTTTGAAATGTTCTTATCATCATGTAAGAGGCTAAGGATAATGAAAGGATCAGAAGCAAGAGGATTAGGATGTGGAGTTTGAGA
AGAAGAATAATAACAAGATTATGAATTCTTCTCTGTTTTAAACAGGAAAAAAAAAGGGGTCTTTTTGAGCTTGGGTTGTCGAATTGCAAA
GAAGCTGGAAATTTGTTTTACACTGATTGGGAAGTGCAAAACAGAAGAAAGAGCAGTTTTTGTTTTGAAGGGGTTGAAAAAAATGAAACT
CTTATTCCTATATGTTGTGCAGGCTTTTAGAAACCATGGTGGTTTTTATAGATCCTGCAGTGTGTTAAATAGCATATGAAGTATGAAGAA
TGTATTTGCTCTGAAAGCAATTGTATAGACACAGTATTCTCAAATGTAATGAGTTTTTTTCCTTTGTACTACTTTTAATCTACGGGTTTT
AACACATCTCTTTATTTGTCTCAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
SlIAA4	auxin-regulated IAA4	auxin transduction

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101391	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983)	341
2	118483	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	92
5	128999	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	71

Preceding Unigenes (1)

Unigene	Build
SGN-U215090	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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