Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U576016 and SGN-U588354 in the current build, Tomato 200607 #2

Unigene SGN-U316069

Unigene Basic Information

Unigene ID:	SGN-U316069
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316069
mRNA sequence:	Length: 1952 bp

>SGN-U316069 Tomato 200607 #1 (32 members)
GGCGGCCAAATCGGCCGAATTGGTGAGCCCCCTCCCTTCCTTTTATTTCCCCTCATCTTTAGGCTTTTCCCTTCTCTACATATATTCACT
TCTTCACTTTCTTTTCATTCATTCTTCAAATTTTCATTTTAAAAAAATGGCTCAATTTTGCTTATTTCTTCTTTTAATCTCTCTTGTTTC
TGTCCCCTGTGTTCTCTCTCGTTCTTTGTCATCTTCTTCACATCCTCACACCCAAATCTTCGATGTTGCAGCATCCATTGAGAAAACTGT
TCAAGTTCTTACTCCTGCTACACAAAGTTTTCAACAAGAAGCAATTAAGAGTGCCCATTTTAATTCTTCTTCAATATCTGTATCAATTTA
TCCTCGTTCAGCTCTTGTTAAGCCCCGCCATAAAGATTATGCAGCTCTCACTCTTTCTCGACTTGAACGTGATTCGGCTCGAGTTTCTTC
ACTCACCATGAAGCTCCACCTCGCGTTAAACAACTTTAATCACTCGGATCTCAAGCCGGTGGAGACCATGGTGCAGCCTGAGGACCTACA
GACTCCTATTACCTCTGGAGCTAGACAGGGGAGCGGTGAGTACTTTACTCGGCTCGGCTTGGGTCAACCGGTTAAGCAGTATTATATGGT
GCTTGACACTGGCAGTGACATCACTTGGGTTCAATGTGAGCCGTGCTCTGATTGTTATCAGCAATCGGATCCAATTTTTAGCCCGTCGAG
TTCTTCTACATACAGTCGGCTCTCTTGCGACGCAGCTCAGTGCTCGGCTCTTGAGGTTTCGGCTTGTGCTAGTAGTCAGTCGTGTCTCTA
CCAGGTCTCTTATGGAGACGGCTCGTTCACTGTTGGAGAGTTTGCAACTGAAACGGTGTCGTTTGGTGACTCTGGTTCGTTCTCTGAAGT
TGCTATAGGTTGTGGCCATGATAACGAAGGGCTATTCGTCGGTGCCGCTGGCTTGATTGCTTTAGGCGGCGGCTCTTTATCTCTACCAAC
TCAAATCAAAGCGTCGTCGTTTTCCTACTGTTTCGTAGACCGTGACTCTGCTTCATCCTCAACGCTGGATTTTAATTCAGCCCGACCCGG
TGACTCCGTAATCGCACCGTTGCTCCGTAACTCGAGAAGGAGCACTTTCTTCTACGTCGGACTCACCGGAATCAGTGTCGGTGGGCAGAT
GCTGTCGATTCCGGCGTCGGTGTTTCAGGTGGACAGAAGTGGTAGCGGCGGGATAATTGTGGATTCCGGAACAGCGGTGACTCGGTTAAA
GAACACTGCTTACAACACTCTACGTGACTCGTTCAGGAAGTACACTCAGCATTTACCTTCCGCCGGGCAATTCGCACTGTTCGATACTTG
CTACGACTTGTCGTCGATGAAAAGAGCGAGTGTTCCAACGCTGTCGTTCCATTTCTCCGGCGGTAAAGCATTGCCATTGCACCCGAAAAA
TTACCTAATCCCGGTGGATTCGTCGGGAAAATTCTGCTTGGCTTTTGCTCCGACGGATGGGTCGCTGTCAATTATTGGAAACATACAGCA
GCAAGGGACACGTGTCAGTTATGACCTGGCCAACAATCTTGTTGGATTTAGCCCCGACAAATGTTGAGTAAGAAATAGTAACACACTCTG
CATCTCCATTCTCCAGTAACTGCTTTTACCAATATTAATTATTATTGTAAAAATATTAAAAGCAGTATACTTTGTTGGAAGAGAAAAAAA
AAATAAAAGAAGCAAATGAAGGGTAGGTGATGGATAATGAATTTATATTAATTATGGATGGTAGGGTTGTTTTTTTTTTAAAATTATGAA
TGTAATGGGTGTAGTTTTTTAATTACTCACAGGAAATTTGAAAGGCGAGAGATTGAAAAGTAGTTGGAAATTAAATGATTGTACTACTGT
AATTATTAATTAATAATACTCCTGTATAAGGTTGGAAAGGAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101417	Peptidase aspartic catalytic	227
2	118448	Peptidase aspartic catalytic Peptidase A1 pepsin - Molecular Function: pepsin A activity (GO:0004194) - Biological Process: proteolysis (GO:0006508)	130
5	129036	Peptidase aspartic catalytic Peptidase A1 pepsin - Molecular Function: pepsin A activity (GO:0004194) - Biological Process: proteolysis (GO:0006508)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U215577	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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