Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U566674 and SGN-U566677 in the current build, Tomato 200607 #2

Unigene SGN-U316111

Unigene Basic Information

Unigene ID:	SGN-U316111
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316111
mRNA sequence:	Length: 2933 bp

>SGN-U316111 Tomato 200607 #1 (8 members)
CTCCATCCTCTTTCTTACTGTGAGAAAATTTAGAGAGAGAGAAGTGTATTTTGAGCTGAAAATTGCTAATGGCAGTTGGTAACTGAACGT
TTTTATACAGGGAAATGTCTGGTAGACGATCGAGTTATACTTTGTTGAATCAAATTCCTAATGATAATTTTTTCCAGCCGCCGGCGCCGA
AGTTCTCTGCCGGAGCTGGTGTAGTGCCGTACGGTGAGTCTAGTTCTGCTGAGAAGAACAGAGGTAAAGTATTTGATTTGGACTTGATGG
ATCAACGCATGATGCAATCACATAACCGGGTCGGATCATTTCGGGTACCGGGTTCGATCGGGTCGCAGAGGCAATCAAGCGAGGGTAGCT
TCGGTGGTAGCTCGTTATCTGGGGAGAACTACGTGGGGACTTCCTTTGGGCATAAGAATGAGGGCTGTGGCTCGTCGGTGGCAAGGAGCT
GGGCGCAGCAGACGGAAGAGAGTTATCAGCTGCAGTTAGCTTTGGCAATAAGGCTCTCTTCAGAAGCAACCTGTGCTGATAGTCCAAACT
TCTTGGATCCTGTGACTGATGTATTGGCATCCCGAGATTCAGATTCTACTGCATCAGCGGTAACAATGTCACATCGATTGTGGATAAATG
GATGTATGTCATACTTTGACAAAGTCCCTGATGGATTTTATTGGATTTATGGGATGGATCCATATGTTTGGGCTCTCTGCTCAGTTGTGC
AAGAAAGTGGCCGTATTCCATCAATTGAATCATTGAGGGCGGTTGATCCCTCTAAAGCACCATCTGTTGAAGTGATTTTAATTGATCGCT
GTAATGATCTCAGCTTGAAGGAACTGCAGAATAGAATTCATAGCATATCCCCTAGTTGCATCACCACAAAAGAAGCTGTTGATCAGCTTG
CCAAGCTGGTTTGCGATCATATGGGGGGTGCAGCTCCTGCTGGAGAAGAGGAACTGGTTTCCATGTCAAAGGGGTGCAGTAATGACCTGA
AGGATCGTTTTGGAACTATCGTGCTTCCCATTGGTAGCCTGTCTGTTGGGCTTTGCAGGCATCGTGCTTTGCTTTTTAAAGTGCTAGCTG
ACATCATTGATTTACCATGTCGAATTGCCAAGGGATGTAAATATTGTAATAGCTCTGATGCTTCCTCATGTCTAGTTCGATTTGAACATG
ACAGGGAGTACTTGGTTGATTTGATCGGTAAGCCTGGAGTTTTAAGCGAACCAGATTCCTTGTTGAATGGTCCATCTTCCATCTCAATCC
CTTCACCTTTGCGCTTTCCGAGATACAGACAAGTTGAGCCTACAACTGATTTCAGGTCATTGGCCAAACAGTATTTCTTGGATAGTCAAT
CACTTAATCTACTGTTTGATGATTCTTCAGCTGGAGCTGCAGCTGATGGAGATGCAGGACAATCAGACAGAAGTTGCATTGATAGAAACA
ATGTAGTCTCTAGTTCAAGTAATCGTGATGAAATTTCTCAGTTACCTCTGCCTCCATTAAATGCATGGAAAAAGGGACGAGATAAAGAAT
CTCAACTTTCTAAAATGTATAATCCTCGAAGTATGTTAAACCCAGTGAACATGGACGAGGACCAGGTTCTTGTGAAGCATGTTCCTCCAT
TCCGGGAAGATGCTCAATCACCGATGACACGACCAGATACAGTAAATGATACTAGGTTTCTTGCTGGAGGAGGTCATGTTGTTTCTGCTA
TACCAAGTGAAGAACTTGATCTCGATGTAGAAGAGTTCAATATTCCATGGAATGATCTGATTCTAATGGAGAAAATTGGGGCAGGGTCTT
TTGGTACTGTTCACCGTGGTGATTGGCATGGCTCTGATGTTGCCGTGAAGATCCTCATGGAACAAGATTTTCATGCAGAGCGACTCAAGG
AATTTTTGAGGGAGGTTGCAATTATGAAGCGGTTGCGACATCCAAATATTGTACTTTTTATGGGTGCTGTCATTCAGCCACCAAATTTGT
CCATAGTCACGGAATATTTATCGAGAGGTAGCTTATATAGACTTCTTCATAAACCTGGTGCGAGAGAGGTGTTGGATGAAAGGCGTCGCC
TGTGTATGGCTTACGATGTGGCAAATGGGATGAATTATCTTCACAAACGCAATCCTCCCATTGTGCACCGAGATTTAAAATCTCCAAATC
TTCTAGTAGACAAAAAATATACAGTGAAGATCTGTGATTTTGGTCTTTCTCGTTTCAAAGCGAATACATTCCTTTCATCAAAGACTGCTG
CCGGAACTCCGGAATGGATGGCGCCTGAAGTTATTCGTGATGAACCATCAAATGAGAAATCTGATGTATACAGCTTTGGTGTCATTTTGT
GGGAGCTGGCAACTCTTCAACAACCATGGAATAAATTGAACCCACCACAGGTTATAGCAGCTGTCGGCTTTAACAGGAAGAGGCTTGATA
TTCCAAGTGACTTGAATCCTCAAGTGGCGATTATTATTGAGGCTTGCTGGGCTAATGAGCCGTGGAAACGCCCCTCCTTTTCCACTATCA
TGGATATGCTGAGACCTCATTTTAAATCTCCTCTACCTCCACCAGGTCACACAGACATGCAGTTGCTTTCATGAATACCTGTGCTCTCTG
CACATATTCTGCCGTCATTGCAAGCCATGTTTTTGGGAGGAAGAACATTTGGATTATGTCAGGCTTGCATGATGTACCTGTTCATATTAA
TTCAGATTGGCTTTGGAGAAAACCAAGTTTTTTTCGCAAGCTCAAGCAGTGGCCACTGCCTCACAGAAGATCCTTCGCACTGGGCGTGTC
CATTTCCTCTTTGAACCATTGTTTGAGCAACTGATTTTGTTCAATTCCAATTTTTTGTAATTTCTGCCCAGGATTCTTGTATAAAGGTAT
GTAAAAGCATTATAATGGAAATTTGGATCATAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
SlMAPKKK77	ethylene-inducible CTR1-like protein kinase	ethylene-inducible CTR1-like protein kinase

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (8)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P118898 (829 Aa)

MSGRRSSYTLLNQIPNDNFFQPPAPKFSAGAGVVPYGESSSAEKNRGKVFDLDLMDQRMMQSHNRVGSFRVPGSIGSQRQSSEGSFGGSS
LSGENYVGTSFGHKNEGCGSSVARSWAQQTEESYQLQLALAIRLSSEATCADSPNFLDPVTDVLASRDSDSTASAVTMSHRLWINGCMSY
FDKVPDGFYWIYGMDPYVWALCSVVQESGRIPSIESLRAVDPSKAPSVEVILIDRCNDLSLKELQNRIHSISPSCITTKEAVDQLAKLVC
DHMGGAAPAGEEELVSMSKGCSNDLKDRFGTIVLPIGSLSVGLCRHRALLFKVLADIIDLPCRIAKGCKYCNSSDASSCLVRFEHDREYL
VDLIGKPGVLSEPDSLLNGPSSISIPSPLRFPRYRQVEPTTDFRSLAKQYFLDSQSLNLLFDDSSAGAAADGDAGQSDRSCIDRNNVVSS
SSNRDEISQLPLPPLNAWKKGRDKESQLSKMYNPRSMLNPVNMDEDQVLVKHVPPFREDAQSPMTRPDTVNDTRFLAGGGHVVSAIPSEE
LDLDVEEFNIPWNDLILMEKIGAGSFGTVHRGDWHGSDVAVKILMEQDFHAERLKEFLREVAIMKRLRHPNIVLFMGAVIQPPNLSIVTE
YLSRGSLYRLLHKPGAREVLDERRRLCMAYDVANGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKICDFGLSRFKANTFLSSKTAAGTPE
WMAPEVIRDEPSNEKSDVYSFGVILWELATLQQPWNKLNPPQVIAAVGFNRKRLDIPSDLNPQVAIIIEACWANEPWKRPSFSTIMDMLR
PHFKSPLPPPGHTDMQLLS

SignalP predicts non-secretion with a score of 0.126

IPR001093 IMP dehydrogenase/GMP reductase
IPR008271 Serine/threonine protein kinase, active site
IPR002290 Serine/threonine protein kinase
IPR000719 Protein kinase
IPR001245 Tyrosine protein kinase

Prediction based on longest six frame method

>SGN-P245320 (835 Aa)

TFLYREMSGRRSSYTLLNQIPNDNFFQPPAPKFSAGAGVVPYGESSSAEKNRGKVFDLDLMDQRMMQSHNRVGSFRVPGSIGSQRQSSEG
SFGGSSLSGENYVGTSFGHKNEGCGSSVARSWAQQTEESYQLQLALAIRLSSEATCADSPNFLDPVTDVLASRDSDSTASAVTMSHRLWI
NGCMSYFDKVPDGFYWIYGMDPYVWALCSVVQESGRIPSIESLRAVDPSKAPSVEVILIDRCNDLSLKELQNRIHSISPSCITTKEAVDQ
LAKLVCDHMGGAAPAGEEELVSMSKGCSNDLKDRFGTIVLPIGSLSVGLCRHRALLFKVLADIIDLPCRIAKGCKYCNSSDASSCLVRFE
HDREYLVDLIGKPGVLSEPDSLLNGPSSISIPSPLRFPRYRQVEPTTDFRSLAKQYFLDSQSLNLLFDDSSAGAAADGDAGQSDRSCIDR
NNVVSSSSNRDEISQLPLPPLNAWKKGRDKESQLSKMYNPRSMLNPVNMDEDQVLVKHVPPFREDAQSPMTRPDTVNDTRFLAGGGHVVS
AIPSEELDLDVEEFNIPWNDLILMEKIGAGSFGTVHRGDWHGSDVAVKILMEQDFHAERLKEFLREVAIMKRLRHPNIVLFMGAVIQPPN
LSIVTEYLSRGSLYRLLHKPGAREVLDERRRLCMAYDVANGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKICDFGLSRFKANTFLSSKT
AAGTPEWMAPEVIRDEPSNEKSDVYSFGVILWELATLQQPWNKLNPPQVIAAVGFNRKRLDIPSDLNPQVAIIIEACWANEPWKRPSFST
IMDMLRPHFKSPLPPPGHTDMQLLS

SignalP predicts non-secretion with a score of 0.106

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118442	Tyrosine protein kinase - Molecular Function: protein-tyrosine kinase activity (GO:0004713) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	149
5	129387	Tyrosine protein kinase - Molecular Function: protein-tyrosine kinase activity (GO:0004713) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	23

Preceding Unigenes (2)

Unigene	Build
SGN-U226226	Lycopersicon Combined #3
SGN-U229607	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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