Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U565144 in the current build, Tomato 200607 #2

Unigene SGN-U316145

Unigene Basic Information

Unigene ID:	SGN-U316145
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316145
mRNA sequence:	Length: 2535 bp

>SGN-U316145 Tomato 200607 #1 (31 members)
GGATTCACTCTCTATAAAGGCCGAAGCACTCGGCGATTTTGTACTCTTTTTTTTTTTTTCTTCTCTCTCAGTTGGGGTGGATCCTGATCG
GGATTTGAATCAAAGCTGTTTCAAGATGTCAACATACACCCCAAAGAATATACTCATTACTGGAGCTGCCGGATTTATTGCATGTCATGT
AGCCAACAGGCTTGTTCGGAGCTACCCTGATTACAAGATTGTTGTCCTTGACAAACTTGACTATTGTTCAAGTTTGAAGAACCTCATTCC
TTCCCGATCTTCCCCTAATTTCAAGTTTGTTAAGGGAGACATTGCTAGTGCAGATCTTGTTAACTACCTTCTCATTACTGAGTCCATTGA
CACTATAATGCACTTTGCTGCTCAGACCCATGTTGATAACTCCTTTGGTAATAGCTTTGAGTTCACTAAGAATAACATCTATGGTACCCA
TGTACTATTAGAGGCCTGCAAAGTGACTGGTCAGATCAGAAGGTTTATCCATGTGAGTACGGATGAGGTTTATGGGGAGACTGATGAGGA
TGCTGTTGTAGGAAACCACGAAGCCTCACAACTCCTTCCCACTAACCCATATTCAGCCACAAAAGCTGGGGCTGAAATGCTTGTTATGGC
TTATGGTAGATCATATGGGTTACCTGTTATAACCACTAGAGGTAACAATGTCTATGGTCCTAACCAATTTCCTGAGAAACTAATCCCTAA
GTTTATACTTTTAGCCATGAGGGGAAAGCCTCTTCCTATTCACGGGGATGGTTGTAATGTTCGTAGTTATCTCTACTGTGAGGATGTTGC
TGAGGCTTTTGAATGTGTTCTACACAAGGGAGAGGTCGGTCACGTTTATAACATTGGAACTACAAAAGAGAGAAGAGTGATTGATGTTGC
CCAAGATATATGCAAACTCTTTGACATAGATTCAGACAAAGTTATTCAGTTTGTGGAGAACAGGCCGTTTAATGACCAAAGGTACTTTCT
GGATGATCAGAAGTTGAAGAACTTGGGTTGGTCTGAGACGACCAGGTGGGAAGAGGGTCTGAAAAAGACTATTGAATGGTATAAGAATAA
CCCTGATTGGTGGGGGGATGTCTCGGGAGCATTGCTTCCCCATCCTAGAATGCTGATGATGCCTGGTGATATAGAAAGAAATTTGGATGG
AGCTGAGAAATATGATTCTGGATCTACCGAATTCTCAGGGAAGTCCAACGAAACCAAAACGGCAGCTCCAGCTTCAAAGACCAGCAATGT
GCCTCAGAAATCCCCTTTTAAGTTCTTGATCTATGGTAGGACTGGGTGGATTGGCGGTGTGCTAGGGAAATTGTGTGAGAAACAGGGTAT
TCCTTATGAGTATGGCAAGGGACGTTTGGAAGATCGCTCAAAGCTTTTGGCAGACATTAATTCTGTCAAGCCCACACATGTATTCAATGC
TGCTGGTGTCACTGGCAGACCCAACGTTGATTGGTGTGAGAGTCACAAACCAGAAACAATTCGTACAAATGTTGCTGGTACTCTAAACTT
GGCAGATGTTTGCAGAGAGAATGGACTCCTGATGGTGAACTTTGCCACTGGCTGCATATTTGAGTATGATGCTGCACATCCAGAAGGTTC
TGGTATTGGGTTCAAAGAGGAAGACACACCCAATTTTGCTGGTTCTTTCTATTCAAAGACCAAGGCCATGGTTGAAGATCTGTTGAAAAA
TTATGACAACGTTTGCACACTGAGAGTTCGCATGCCAATATCTTCAGATCTCAGCAACCCTCGCAATTTCATTACCAAGATCAGCCGCTA
TAATAAGGTGGTCAATATTCCTAACAGTATGACCATATTGGATGAGCTTCTTCCTATTTCAATTGAGATGGCAAAGCGTAATCTCAGAGG
CATATGGAATTTCACAAACCCGGGTGTTGTGAGCCATAATGAGATATTGGAAATGTACAAGAAATATATCGATCCAGCATTTACTTATGC
CAACTTCACGGTGGAAGAGCAGGCCAAGGTAATCGTTGCAGCTCGCAGTAACAATGAGATGGATGCATCAAAGTTGAAGAAAGAGTTCCC
CGAGTTGCTATCAATTAAAGAGTCGCTGATCAAGTACGTTTTTGAACCAAACAAGAAAACCTCTGCATAAAAAGGCCGTGTTCTCAGGAA
TTGTGTATGCTATTTTAGCTATTATTTCATTATTAGTTCCTCGAATTCGCTAGATATTCATTAGTGATTTAGCTGTTGTTCCTTGTTATT
TTTGTATGAATTCATAATCTGTGCCTTCTTTGGGGAAGATTTGGAATATTGGATAGGCTGTGTTCCCTGTATCTGTTGTTAAATGAGTTT
GTGTTAAAGATCTTGTGTACTTTGTTGACTTTGATATATGGATGTATGAACTTTTTCTTGCTCAAAAAAAAAAAAACAAATAAGCCCTTA
ATAATTCCTCCACTTTCTAAGGCATCTGAGAAAACCTTGAATGTGGTATTGGAGAAAATGTCGGACACATCTCGCAATTCAACATCAAAA
CGAGTATCTGGTCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 9 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P118932 (698 Aa)

MSTYTPKNILITGAAGFIACHVANRLVRSYPDYKIVVLDKLDYCSSLKNLIPSRSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQ
THVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP
VITTRGNNVYGPNQFPEKLIPKFILLAMRGKPLPIHGDGCNVRSYLYCEDVAEAFECVLHKGEVGHVYNIGTTKERRVIDVAQDICKLFD
IDSDKVIQFVENRPFNDQRYFLDDQKLKNLGWSETTRWEEGLKKTIEWYKNNPDWWGDVSGALLPHPRMLMMPGDIERNLDGAEKYDSGS
TEFSGKSNETKTAAPASKTSNVPQKSPFKFLIYGRTGWIGGVLGKLCEKQGIPYEYGKGRLEDRSKLLADINSVKPTHVFNAAGVTGRPN
VDWCESHKPETIRTNVAGTLNLADVCRENGLLMVNFATGCIFEYDAAHPEGSGIGFKEEDTPNFAGSFYSKTKAMVEDLLKNYDNVCTLR
VRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYIDPAFTYANFTVEEQA
KVIVAARSNNEMDASKLKKEFPELLSIKESLIKYVFEPNKKTSAKKAVFSGIVYAILAIISLLVPRIR

SignalP predicts non-secretion with a score of 0.214

IPR003869 Polysaccharide biosynthesis protein CapD
IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase
IPR001093 IMP dehydrogenase/GMP reductase
IPR001509 NAD-dependent epimerase/dehydratase
IPR013120 Male sterility C-terminal
IPR005913 dTDP-4-dehydrorhamnose reductase

Prediction based on longest six frame method

>SGN-P245354 (712 Aa)

DSLSIKAEALGDFVLFFFFSSLSVGVDPDRDLNQSCFKMSTYTPKNILITGAAGFIACHVANRLVRSYPDYKIVVLDKLDYCSSLKNLIP
SRSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDED
AVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGKPLPIHGDGCNVRSYLYCEDVA
EAFECVLHKGEVGHVYNIGTTKERRVIDVAQDICKLFDIDSDKVIQFVENRPFNDQRYFLDDQKLKNLGWSETTRWEEGLKKTIEWYKNN
PDWWGDVSGALLPHPRMLMMPGDIERNLDGAEKYDSGSTEFSGKSNETKTAAPASKTSNVPQKSPFKFLIYGRTGWIGGVLGKLCEKQGI
PYEYGKGRLEDRSKLLADINSVKPTHVFNAAGVTGRPNVDWCESHKPETIRTNVAGTLNLADVCRENGLLMVNFATGCIFEYDAAHPEGS
GIGFKEEDTPNFAGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRG
IWNFTNPGVVSHNEILEMYKKYIDPAFTYANFTVEEQAKVIVAARSNNEMDASKLKKEFPELLSIKESLIKYVFEPNKKTSA

SignalP predicts secretion with a score of 0.555

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118929	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	25
5	129321	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	25

Preceding Unigenes (1)

Unigene	Build
SGN-U215146	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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