Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564919 in the current build, Tomato 200607 #2

Unigene SGN-U316183

Unigene Basic Information

Unigene ID:	SGN-U316183
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316183
mRNA sequence:	Length: 2545 bp

>SGN-U316183 Tomato 200607 #1 (29 members)
GGAGCAGCTAGGTTTTGTTTCTGATAAAGAGAGCGAGCAAGGGAGAGAAGAGCTTAAATTGAGGCGCTTAGTAACTTCTCCCTCTCTCTT
TGTTGGCTTGTTGAATCTCCTTCAGGTTCAGTTCCACTCATCATTCATTATGAGCAACGGGAAGGACAACTTCAGTGTTGCCGATCTCAG
CGCTGCTTTGAATGCGGGGGACCGAGCAGACCTTGTCAATGTACTCAAAAGTAAACTTCAGGATCTTACTGGGAAACACTCAGATGTACT
TGAAAATTTGTCCCCCATTGTCAGGAAGCGTGTTGAGGTTCTCAGGGAGATTCAGACTCAACATGACGATTTGGAGGCAAAATTTTTTGA
AGAGAGAGCTGCACTTGAAGCCAAATACCAGAAGCTTTATCAACCATTATACACAAAGAGATTTGAAATTGTGAATGGGGTTATTGAAGT
TGAAGGGGCAACAACCGAGGCTGCAGTAGCAGACCAGCAAGTGGATAAGGATGCAGTGGAGAAAGGTGTCCCTGATTTTTGGATCACGGC
TATGAAAAATAACGATGTGCTATCTGAGGAGATTACCGAGCGAGATGAAGAAGCTCTCAAATTCCTCAGGGATATAAAGTGGTCCAAGAT
TGATGATCCAAAGGGTTTCAAGCTTGAATTCTTCTTCGAGGCTAATCCTTACTTCAAAAACACTTTGCTGACTAAAACCTATCACATGAT
TGATGAAGATGAACCAATTCTGGAGAAGGCGATTGGGACTGAGATAGAATGGTATCCTGGAAAATGCTTGACACAGAAGATTCTAAAAAA
GAAGCCAAAGAAGGGGTCAAAGAATGCCAAGCCTATCACTAAAACAGAGCAGTGTGAAAGTTTCTTCAACTTCTTTTGTCCTCCTCAAGT
ACCGGAGGATGAAGAGGATATTGATGAAGATGCTGCTGAAGAACTTCAGAATTTGATGGAACAAGATTATGATGTTGGGTCAACAATTCG
AGATAAAATCATTCCACATGCAGTTTCATGGTTCACTGGGGAAGCTGCTGAGGATGATGATTATGCTGACTTGGAAGATGACGAGGATGA
AGATGATGAAGAGAATGAGGAGGATGAAGAAGATGAGGATGAAGAAGAAGATGAGGACGAAGAGGAGGAAGAAGAAGATACCAAGACCAA
GAAGAAGTCAGCTGCTGCTCGCAAGAAGAGTGGAAGAGCTCCTGTTGGAGATGGTCAGTCTGGTGAGAGGCCACCAGAGTGCAAGCAACA
GTAGCTCTTCTTAATGAAGAATGGTTGGATATGATAGTGTCTTGAGAAGTTGGATGAGATAGTAAAAAATTTGTGCAATTTTGATGGTTG
GCTTGTTATATATGGAGTTGTGCTTAGAACAATCTGTTAGAATCATTTTTCTTTTAATATTATCTTTTATTCGTTCCCAGTCATTTTTGG
TCTTTTTATATTCCTTCAATTTTCGAGGGAGATAGAATGTGATTGAGAATAGCATAACCTATTTTTGTGATTTGTTCTTGGATTTGGATA
ATTCAATTTTTTCATGAGGTTTTATTTGACGAGTCAATTTATAGTCCGTACAATTTCTTGGTTTTGGTTGGAGATGAAATTCTAATTATA
TTAGTTTTGAAACAACGTCAAAATTTTTATGAAATCATTTTTACAAGTCGGATACAGGGTGTGTTTGGTATGGAGGAAAATGTTTTCCTA
CTCTCTTTTGTTTGGTTGCAACATATTTTGTTGGAAAAACATTTTCCTAAGCGACTTGTTTTCCTTAAATCAGCGGAAAATGACTTCTGG
AGTGATGTTTCTCCATTATTTCTCCAGCTTGTTTCTCTCCAAGTTTAGGTTTTCCGTTCTTTTCATTCATATTCCTATAAGAATTTTGAT
GGTATGCGTTTAATAATTATAGTATGGTTTTTGATTGCGAAGTTCTTCAAGATATTCATCTTTCACTTGCTTTTTGCTGAAATAGTTGCT
CGTGTTTGAATTTGACTTTATTTGGTGAATTTGTTTATTGAATTTGATATTTTTTGGTTAACCTATGAATTGAGGTCTTTTGTTATTGAT
TATTTCATATTTTTCTTAGATTTGACTCAAGTATGTTTGATTGTGTGTGTAATGTTATCTGTTCACTCTTTGATAGTTGAACCAGAGATA
TGTAGATCTGAAATAGGATTTTAGATTCTAGTTTGTGGATTCTAAAGGGAAAGTTGAAAAGATTTATTGGGTAATTTGGAGGAAAGACAT
TTTTAATTATGTGCTGGTTTTGGTATTGATTTCCTCAAAATTGATCAGTTGTTCCTATATGCCTTGACAAATTTTCTTATTATGTTCTTT
TCTTTTTTATATCATAGGCGCAGTTGGAACAAATGGATATGACAAACAAAAATGAAGATGATGCAATAGTTGGAGCTGTAGATATATCTA
TTTTAGCTTTCGGAGTTGCAATTAATGTGCCTATGAAAATTAAAGTAGTATATATAGAGAACCTTATACGAATAACGATCAAGAAAGGGA
ATTTTACATGAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101382	Armadillo-like helical - Molecular Function: binding (GO:0005488)	408
2	118902	Nucleosome assembly protein (NAP) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334)	26
5	129383	Nucleosome assembly protein (NAP) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334)	23

Preceding Unigenes (1)

Unigene	Build
SGN-U216171	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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