Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570099 in the current build, Tomato 200607 #2

Unigene SGN-U316201

Unigene Basic Information

Unigene ID:	SGN-U316201
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316201
mRNA sequence:	Length: 1499 bp

>SGN-U316201 Tomato 200607 #1 (30 members)
TGGAATCTTCCACAGTTTTCTCGACTCTGTTAGTTTTTGCATTTTCCGGTCTTCTCCTGCACTTTTCCTTCTCTTTTTTTCTCCGCAAAT
TCATATACTGAAGCAATCTTCAAGAATCATTTTTCTTCAAAAACCCAAATTTCTCAAACTGAAGAAAAGGAAGAGAAACGAAGCAGTAGT
AGAGAAGATGGGGGTTGATTATTACAAAGTATTGGGTGTTGATAAGAACGCTACAGATGATGATTTGAAGAAAGCTTATAGAAAACTTGC
CATGAAATGGCATCCGGATAAGAACCCACAAAACAAAAAAGAAGCTGAAGCTAAGTTCAAACAGATCTCTGAAGCGTATGATGTGCTTAG
CGACTCCCAGAAAAAAGCTGTGTATGACCAGTATGGTGAAGAAGGGCTCAAGGGCGGGGTACCACCACCTGGAGCTGGTGGTCCTGGTGC
CGGTTCAACCTACTTTTCTACTGGGGATGGCCCTACTTCATTCAGATTCAACAGTAGAAATGCTGATGACATATTTGCTGAATTTTTTGG
CTTTTCTACTCCATATGGACCTGGAGGGGGTAGGGGCTCAAGGTTTGGTAATATGTTCACTGATGATATATTCGCAGCATCCTTCGGTGA
AGGAGGAGGAGGTGGTGGTGTTCCAATGCATTCATCAGTCCCAAGGAAAGAGGCTCCGGTACAACAGAACTTGCCTTGTAATCTTGAGGA
TCTCTACAAGGGTACCACCAAAAAGATGAAAATTTCTAGAGAAATTGCCGATTCGAGTGGCAAGAGAATTGTGCAAGAGATTCTGACAAT
CGAAATTAAACCTGGGTGGAAGAAAGGTACAAAGATCACCTTCCAAGAAAAAGGGAATGAGCAGCCAGGTGTTATACCAGCTGATCTGGT
CTTCATAATAGATGAGAAACCTCATAAGGTTTTCTCGCGTGATGGAAATGACTTGATTGTCACACAAAAGATTCCTTTGGCTGAAGCTTT
AACCGGTACTACTGTCCAACTCACTACTCTGGATGGAAGGAACTTAACAATTCCAATCAACAACGTGATTCAACCAAATTATGAACATAT
CGTCCCAGGTGAAGGCATGCCGCTTCCAAAAGATCCGTCAAAGAAAGGGAATTTGAGGATCAAGTTTGACATCAAGTTCCCTGCTCGTCT
CACTGTGGCTCAGAAATCTGGTATCAAAGAGCTGTTGGGTTCTTGAGCTTTATGCACAACTCTGGTGCTGGTCTTGTTCTGTGTAAATAT
TTTCTTTAAACCATTTGGAGCTATGGGATGGGGCGTTGGTTTAGGCTCGTAGGCGAGTCTCTTTCGTAGCATAGTAGAATTTTGTTTCTG
TTTATTATGGGTATTGTTCAGTATATCCATTCAACAACAGGCAATACATTTACTTTTTTTGGAATAAGTCTTGAAAATTCACAGGCCTTT
TGGTTGTTGAATCATTAAAAAAAAAAAACATGTTGTCTGTTATGAATGTTTTCAGCAAT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
t19d8	DnaJ like protein (t19-8 gene)

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118427	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	212
5	129234	Heat shock protein DnaJ - Biological Process: protein folding (GO:0006457) - Molecular Function: heat shock protein binding (GO:0031072) - Molecular Function: unfolded protein binding (GO:0051082) Chaperone DnaJ C-terminal - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) HSP40/DnaJ peptide-binding	29

Preceding Unigenes (1)

Unigene	Build
SGN-U215427	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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