Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579192 in the current build, Tomato 200607 #2

Unigene SGN-U316229

Unigene Basic Information

Unigene ID:	SGN-U316229
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316229
mRNA sequence:	Length: 2319 bp

>SGN-U316229 Tomato 200607 #1 (25 members)
TCGATTTTTCTTCTCTCTTCCCTCTCTTACATTTATTAATTAATGACTCAAAGAGAGAGAAGTGGAAAAAAATAAATAAATGAACAAGAA
AAAGCAAGAATACAATAGTTTGAATCAAAGATTGATTCTTTAAGAAATTATCGTTTGGGTTTTTTGAGAGAAGATGGTGGGGTGTTTGAC
TTTGGAGCTGAAGAGGGTTTGTTTTGCTTTTTGAGGTAACAGATTGGTTTTTTGTCTGATGGTTGGTATGAAAGTGGCATTTGGTAGGTC
TACAAGTTTGAATAGTTTTGCTGATGAACTGTTGTTTGTTAGAGGTTAAAAAGTTTTGATCTTTGGTTTAGTTTACAGAGATATTGGATT
TTACCTGCTTTAGTTTTGGTGTTTATAAAGTTGATTGATCATTTATGGTTATGGTGGTTGGAGTTTGATTTCTTGATTTACTACCATCCT
TTGATGGACTAGAAGGAATTGTCAATAGAAAATTTGGCAAAGAGAATTCTTGAATTTGAATCTTTTTCTGAGGTGGAGGGGGAGGAAAAG
AACAAATTTTTTATTGGTTATCTAGTGTTGTAAGCTGATTGAAGAAATGGATGATGAAGCTAATTCTTGGATTAGGAGAACAAAGTTTTC
TCATACAGTTTGTCATAGGTTGGATTCTGCAAGATTGACGTCTATTCCTATTAGTACTATTCAGTCAGGAAGAATTGCTGGAGCAAAAAC
TAGACCTGGATCAGGTTCTTTTAATTCAATACCTGAGCCAACTGTTGCGCCTCTTCAGCGCAATCCAACTACAAACAAACATAGGACTGT
ATCACCTCATCCAGAAACATCAGTTCCAGATACCTTTAAGGAGGCTCGATCTAGTCAGAAGAGATTTTCAACTCCGCGTCCACAAAGGAA
GGAACATGAGAAGAAGATTGTGAGTAAGTCGTTTTATAAAGATTCTAGGGAATCGAAATCACCTACGTTGAGATCTCCTGGTTCAAGATC
TCCATCAAATACAAGTCCCCTACGGCATTTCACATCATTCAAATTCCATGACAAAACAAAGAGCCGAAAGGATTCAGCATGGAGTAGGTA
CTTTGATCATGGTGTTGGGAGGGTGAGTTCTGTGGAAACAGCAGATGAATATACAATTGATCTTTCTAAGCTGTTTCTTGGGCTAAGATT
TGCACACGGTGCACACAGTCAGCTTTACCATGGGAAATACAAGGATGAAGCTGTTGCAGTGAAAATTATAAGAGTACCAGATGATGACGA
AATTGGAGCGTTAGGAATTCGATTGGAGAACCAGTTTATTAGAGAAGTTACTCTCTTGTCTCGTCTCCACCATCCAAATATTATAAAGTT
CGTAGGTGCGTGCAAACAACCACCAGTTTTTTGTGTTGTTACTGAGTATATATCTGAGGGTTCTCTGAGAGCGCACCTTCATAAGCTTGA
GCATAAGTCCCTATCCCTGGACAAATTGCTTGCACTTGCCATGGACATTGCTCTTGGAATGGAATATATCCACTCGCAAGGCATTATTCA
TCGGGACCTCAAACCAGAGAATATTCTTATCGATGAGGATTTTCACCTGAAAATTGCTGACTTTGGAATTGCTTGTGAGGAGGCATACTG
TGATCTCCTGGCGGATGATCCAGGCACTTACCGTTGGATGGCACCAGAGATGATTAAGAGAAAATCATACGGAAGAAAGGTTGATGTATA
TGGCTTTGGACTCATCCTATGGGAAATGGTGTCTGGTACCATTCCTTATGAAGATATGACACCAGTACAGGCTGCTTTTGCTGTTGTAAA
CAAGAATATGAGACCACCTATTCATGGGGACTGCCCTACAGCCATGAGAGCTTTAATTGAGCTGTGTTGGGCTCTGCAACCAGATAAGAG
ACCTGAGTTTTGGCAGATTGTGAAGGTATTGGAGCAGTTTGAATCATCAGTCGCTTATGACGGAACTCTAAATCTTGTTCAGAAGACGAT
GTGTCTAGATCACAAGAAAGGGCTTCATCATTGGATCCAAAAGCTTGGTCACGTACATCAAAATGCTTCATTACATCAAAATGTTTTATC
AATGCCCATGCCGAAACCTAAGTTCGCTTGAGTATTCTGTATGATCTGACTTTTGTAGCTTTACCAGGTCTCTGTGTAATTAAACTTCTT
TTGGTTAAATACTGTTGTATATCTCTGTTCCATGATTAAGCGAATGTGAATTATTAGGCTGTAGGTGTGCATTGAGGTGGCCTCTGTAAG
CTTACCTATTTTGGTACACAAATTATGATCATCAGTTCTTGAATGCAAGTACCATTTGTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118442	Tyrosine protein kinase - Molecular Function: protein-tyrosine kinase activity (GO:0004713) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	149
5	130737	Tyrosine protein kinase - Molecular Function: protein-tyrosine kinase activity (GO:0004713) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U215048	Lycopersicon Combined #3
SGN-U215049	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer