Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579489 and SGN-U581532 in the current build, Tomato 200607 #2

Unigene SGN-U316509

Unigene Basic Information

Unigene ID:	SGN-U316509
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316509
mRNA sequence:	Length: 2227 bp

>SGN-U316509 Tomato 200607 #1 (22 members)
TCAATCAGAAACTGTTTGGAGACAAGCTGATAAATACGGAGTCCCTAGGATATGTTTCGTAAATAAGATGGATCGTCTTGGAGCTAATTT
CTTCCGAACAAGAGACATGATAGTAACAAACTTGGGTGCTAAACCACTTGTAATTCAGATACCAATTGGTGCAGAGGATACATTCAAAGG
ATTAGTTGATCTTGTGATGATGAAAGCTATTGTTTGGTCCGGAGAAGAATTAGGGGCAAAGTTTTCCTATGAGGACATTCCTGCTGATCT
TCAAGAGCTAGCTGAGGAGTATAGGGCACTGATGATTGAGACTGTAGTTGAATTGGATGATGATGTAATGGAGAAATACCTGGAAGGAGT
TGAACCTGATGAGGCAACCATCAAACAGTTGATCAGGAAGGGAACTATATCTGGTAATTTTGTCCCTGTATTGTGTGGCTCAGCTTTCAA
GAACAAGGGGGTTCAGCCGCTGCTCGATGCAGTTGTGGATTATTTGCCTTCTCCAGTTGACGTGCCACCCATGAATGGAACTGACCCTGA
CAACCCAGAAGTAATCATTGAGAGGGCCCCTAGTGATGATGAACCATTTACTGGTTTGGCATTTAAGATCATGAATGATCCTTTTGTTGG
GTCTCTCACATTTGTTAGGGTATATTCAGGAAAGCTTAGTGCAGGATCGTATGTATTGAATGCAAACAAAGGCAGGAAAGAGAGAATTGG
CAGACTTCTGGAAATGCATGCTAACAGTAGAGAGGATGTAAAGACAGCGTTAACTGGTGATATTGTTGCTCTTGCTGGATTGAAAGATAC
AATTACAGGAGAGACATTGTCTGATCCCGAGAAGCCTGTTGTGCTTGAGCGCATGGATTTCCCAGATCCTGTTATAAAGGTTGCAATTGA
ACCTAAGACCAAGGCAGACATTGATAAGATGGCGCAAGGTTTAATAAAACTGGCACAAGAGGATCCGTCTTTCCATTTTTCACGTGATGA
GGAGATTAACCAGACAGTTATTGAGGGAATGGGAGAATTACATCTTGAGATCATTGTAGATCGACTGAAAAGGGAATTTAAGGTGGAAGC
TAATGTCGGAGCTCCACAAGTCAACTACCGCGAGAGCATTTCCAGGAACTCAGAAGTAAAATACGTGCATAAGAAGCAGTCTGGTGGTTC
AGGACAGTTTGCTGATATCACAGTAAGGTTTGAACCCATGGAAGCAGGTGGTGGATATGAATTCAAGAGTGAAATCAAGGGAGGTGCAGT
GCCAAAAGAATATATCCCTGGTGTTATGAAGGGATTAGAAGAATGCATGAGTAACGGAGTACTGGCAGGCTTTCCAGTTGTTGATGTTCG
TGCTGTGCTAGTAGATGGATCTTACCATGATGTGGATTCAAGTGTTTTGGCATTCCAGCTGGCTGCTCGGGGAGCTTTTAGGGAAGGGAT
GAGAAAAGCTGGTCCACAATTGCTAGAACCCATAATGAAGGTTGAAGTAGTTACACCAGAAGAACATCTAGGGGATGTGATTGGTGACCT
TAACTCAAGGAGAGGCCAGATCAACAGCTTTGGAGACAAGCCTGGAGGTCTCAAGGTGGTGGATTCTTTAGTTCCATTAGCAGAGATGTT
CAATTACGTTAGTACCTTGCGAGGAATGACAAAGGGGCGTGCATCGTATGTTATGCAGTTAGCCAAATTTGACGTTGTCCCTCAACACAT
TCAAAACCAGCTTGCCAAAAAGGAGGAAGCAGCTGCTGCTTAGTCAGTCATCTTCCAGATTTTGGATCCACAAACTTGAAAATAGGTATT
TTTACTCGACGAAGATGTTAAGGCTTGGACAACATTCTTTTTGTACGTACCAGCATGGAACACCGATGGAGAATAGCTGATATTTAGTCA
TGCGTCTGAGTTTTTTCAGACGTTTGTGTATGTTGTTGAGTTATAAGCTGAGACTCCGAAGAGACGGAAGAAAGAAAGAAGGAAATGTGT
ATACATGCATTTAAGATGTCTCTACATCCAAAAGAAGCATCAATATTTTAGGGCAAGATTGAGTGTGTCTCCGATTGTGGGATTATTTTT
CTTACTATAGAAATAAATATATGCTTTGTAACAATCTGATGCTCTTTATTGAGATCTTAGGTGTAACATCTGACGATTTTGAGTTGCTTA
TTTCACGTTTGTTTTTACTTTGCACTTCTGTTATAATATTACGTACCTAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	7
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	119664	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13
5	129999	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U219928	Lycopersicon Combined #3
SGN-U242913	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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