Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567777 in the current build, Tomato 200607 #2

Unigene SGN-U316562

Unigene Basic Information

Unigene ID:	SGN-U316562
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316562
mRNA sequence:	Length: 1870 bp

>SGN-U316562 Tomato 200607 #1 (23 members)
TGATTTGACGACTGCACAGTGGATGATGAAGTTTAATAGTTATCCTGAGAATAATATTCCGAATACTGTGAATTTAAGTGTTGTAGTGAA
TTGTTCTTGTGGGAATAGTGACGTTTCGAAGGATTTTGGGTTGTTTGTGACGTACCCTGTGCGGGCGGAGGATAACTTGACGTCAGTGGC
TTCAGCAGCCAATGTGAGTGAAGATATAATCAGAAGGTATAATCCCGCGGCCGTGTCCATACTAGATATAGGGCAAGGAATCATCTATAT
ACCGGGAAGAGATAGAAATGGGAACTTTCCACCGCTGCCAACAAGCACAGATGGTTTGTCTGGTGGCGCTAAAGCTGGGATATCTATAGG
AGCAATAGGAGTAGTCTTGCTGTTGGCTGGTTTGGTTTATGTAGGATGTTATAGGAACAAAACACGAAAGATTTCGCTGCTCAGATCGGA
AGACCACCTCCATCAGTATGGTCATGGCCCAGAAGGCAGTACGACAGTTAAAGCTGCTGATTCCGGTCGCCTGGCTGATGGCAATTCTCC
AGTGCTTTCAGGCATAACTGTGGATAAATCTGTTGAGTTCACTTATGAGGAGCTTGCTACTGCAACTAATGACTTCAGCATTGCTAACAA
AATCGGACAAGGTGGTTTTGGTGCGGTTTATTATGCTGAGCTCAGAGGCGAGAAAGCAGCCATCAAGAAAATGGACATGGAGGCTACCAG
GGAGTTTCTAGCTGAATTGAAGGTCTTGACAAATGTTCATCACCTGAACCTGGTGCGCTTGATAGGTTATTGTGTTGAAGGTTCCCTCTT
TCTTGTATATGAATACGTTGAGAATGGCCACATAGGCCAACATCTACGTGGTACAGGAAGGGACCCATTGCCATGGTCTAAGAGGGTTCA
AATTGCTCTAGATTCAGCTAGAGGTCTTGAGTACATACATGAACATACTGTACCAGTTTACATCCATCGCGATATTAAAACTGCAAATAT
TCTGATAGACAAAAACTTCCATGCAAAGGTGGCAGATTTTGGTTTAACGAAACTGACTGAAGTTGGAAGCTCGTCCTTGCAAACACGACT
TGTGGGTACATTTGGATACATGCCTCCAGAGTATGCTCAGTATGGTGATGTCTCTCCGAAAGTTGATGTTTATGCTTTTGGTGTTGTCCT
ATATGAACTAATTTCAGCCAAGGAAGCGATTGTCAAGCCAAATGGTTCTGTAACTGAATCAAAGGGTCTTGTTGCTTTGTTTGAAGAAGT
ACTTAATCAGCCAGATCCTGATGAAGATCTTCGGCAACTGGTTGACCCAAGACTTGGAGATGACTATCCCCTTGATTCAGTCCGGAAGAT
GGCACAACTTGCCAAAGCTTGCACCCATGAAAATCCCCTAATAAGACCAAGTATGAGATCAATAGTGGTTGCGTTGATGACCCTCTCTTC
GTCAACAGAAGATTGGGATGTTGGATCTTTCTATGGAAATCAAGGCATGATAAACCTCATGTCTGGAAGGTAGTAAACCAAAATATTGCA
CCCACGCGCAATTAACATTTCATTCAGATCCATGTTGTTTAAGCATTGGATATGTGTACTAGTGCATTTTTACTTGTATAGTACTTGCTT
GAATAGTGTAAGAAAAGCATAGAAAGATGTATTTCAATTGTAACATTTAGCACATACTTTATGAGTTGGAAATGGAACATTTCCTCACGA
GGAAATACATGGTTTCTTTGTTGTCTGATGTCTGATCAGAGGCAAGAACTAGAATTTTCAGTTTATGAATTTTAGTCTACAATTCTTTTT
ACATATTGGTTTGATATGTATTATTTGTACTTAATAAATTAAATTTTTTATTTTACAATTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	14
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 4 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128927	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	615

Preceding Unigenes (2)

Unigene	Build
SGN-U215435	Lycopersicon Combined #3
SGN-U235341	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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