Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571474 in the current build, Tomato 200607 #2

Unigene SGN-U316619

Unigene Basic Information

Unigene ID:	SGN-U316619
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316619
mRNA sequence:	Length: 1334 bp

>SGN-U316619 Tomato 200607 #1 (23 members)
CGGCCGATTGATCCTTCACGCGCAACACAGCAGCGCAGCATCACAGATTTGTAAAATTTCATTTCCTCTGTTTTCATAGCAAATGATACA
TGTGCAAATACTGTTCATAGAACAGTAAAATTGTGCCTGCTCTTTTTTTTTCTTTTGTATTTTCTCGAATTATTCAATATTTGGATTGAT
GATGACGGAGAAAATCGATCGAAAGGGTAACGAGAACGGAGAGTTGAAGAAGAAGCGGAAGCGGCAGAAAATAGGAATGTCAAGGGTTCA
GAAACTCTATCGAACTTGCAAACAAGTTTTCACTAATTGCAAACCTGGCGTTGTGCCGTCACCGGAAAATGTTGAACTTGTCAAGTCAGT
TTTGGATAAGATGACTGAAGCAGATGTTGGCTTAAGACCCAATATGCCATATTTCAAGTCAACTGTATCAGATAAACCTCCTAAAATAAC
ATACTTGCATCTCCATGAATGTGACAAATTCTCGATTGGTATCTTTTGCTTACCACCAAAAGCAGTCATTCCTCTTCATAACCATCCTGG
AATGACAGTTTTCAGCAAGCTTCTCTTTGGGAAAATGCACATAAAATCTTATGATTGGGCGGACAATCTCCTTCCGAAATCAACTACACC
AGGGGATTGTACAGGTCTGCGTCTTGCAAAATTGAAGGTGAATTCCAAGTTTAAAGCTCCTTGCAAAACTTCAATCCTCTATCCTGCTGA
CGGAGGTAATATGCACTGCTTCACAGCAAAGACAGCTTGCGCCGTACTAGATGTTCTCGGCCCACCTTATTGTGATCCTGACGGTCGCCA
CTGCCAATACTACTATGACTTCCCCTTTGCCAACATGTCAGTGAATGACTTTTTAGTACCTGAAGAAGAGCAAAGTGAGTATGCATGGCT
CAAAGAGAGGGAGAAACCTGAGGACTTGACTGTAGCTGGAGCACTGTATAGTGGACCAAATTTAGTGTAGTAAACTCAGCTTGTGTTGAA
GAAGAAGAAGAATGAGGATTTTCATTTTTTCTGCTCAACTTTTTACACTTTCCACTGATGAATGAATAGTCAAAAGGGATAAAAGTTAGG
AGGAAGAGGTTTTCTTTTTGCGTGAAGAGCTCATGTATATATTCAGACAGATCGGAACAGGCAAGGAAGAAGGAACTGAGAATGTATGTG
TTCTCAAAATTGTATGTATAAACTAATGTTTTGAGAAGACTCATAAGAAAGAGAGTCCTTTACGATCTTTTGTTAGTACCTACTTATGGT
AGGTTCCTATGATCCAATACGTACACTTGGTTTTTCGAATATGCACGGTTTATTGTAGTAGATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TOMTRALTAD	meloidogyne-induced giant cell protein DB114

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101869	Cupin RmlC-type Protein of unknown function DUF1637	31
2	118782	Protein of unknown function DUF1637 Cupin RmlC-type	30
5	130076	Protein of unknown function DUF1637 Cupin RmlC-type	13

Preceding Unigenes (2)

Unigene	Build
SGN-U215475	Lycopersicon Combined #3
SGN-U215476	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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