Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578379 in the current build, Tomato 200607 #2

Unigene SGN-U316786

Unigene Basic Information

Unigene ID:	SGN-U316786
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316786
mRNA sequence:	Length: 1227 bp

>SGN-U316786 Tomato 200607 #1 (25 members)
TAGGGTTGGGCACTTATATATGAAGACAAAAAGCAAACCTCACCCCATTAATTGTCTCTCTCCAACGCCAGCCAGGTGTTAGCGTTTCGA
GGAGGAGAAGACATCAAAGCACTTCTCCTTCAATCAATTTTACAGATTTGTAGCCCTAGATCAATCCGTAGGGCTCTGATTGGGTTCTTT
CGGATCGGAGGATAAGCGAACCGGATCAACGATGTTCTTGGTAGATTGGTTCTATGGAATTCTCGCAACCCTCGGTTTATGGCAGAAGGA
GGCGAAGATCTTGTTTTTGGGTCTCGATAATGCCGGAAAGACCACCTTGCTCCATATGTTGAAAGATGAGAGATTGGTTCAACATCAGCC
AACACAATACCCAACGTCAGAGGAGCTTAGTATTGGAAAGATCAAGTTCAAAGCATTTGACTTGGGTGGTCATCAGATTGCTCGCCGTGT
TTGGAAAGATTATTATGCTAAGGTGGATGCTGTTGTATACTTGGTGGATTCCTATGACAAAGAAAGGTTTGCCGAGTCTAAGAAAGAGCT
GGATGCTCTCCTCTCTGACGAGTCCTTGGCCACTGTGCCATTTCTTATATTGGGTAACAAGATAGACATTCCTTATGCTGCCTCTGAAGA
CGAACTGCGTTACCATTTGGGGCTAACAGGCGTCACTACTGGCAAGGGGAAGGTAAACCTGGCAGAATCCAATGTCCGTCCACTTGAGGT
GTTCATGTGCAGCATAGTCCGCAAAATGGGTTATGGGGAAGGCTTCAGGTGGATGTCTCAGTACATCAAGTAATCAAGTCTAGGGAGAGT
GAGATTTGTTGCTGTTTTAAGTCTTGTTTTTGTACTGGATAAGTTGAAGATGTCTGTTTATCTCTATGGGTTAAAACAGTTTCTGTTTTT
CCCCAGGTTTTCAGTGAAACAGCTAAAAACAGTGTTCTATTATATATGTCTAGTCTACATTTTTCTTTTCATATATAGTTGTTAAGTGTT
CTAATTTGTTCCTTCCCAATTATTGGATAAAAAAAGTTGATTAGTGTGGGGGTAGTTCACTGCTAAATACAATTAGTAATGAAGACGTGA
TATTCATCTACCAACAAACTTGCAGCGAGGCTGCTTATATACTACTATCAATGCAGCTTTCTGCCTAAACATACGAAATTGTTAACGTAG
TTTATTTGTATATATGGGTTGGGAAAANAGATACTTGTATTTTTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118457	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525)	119
5	129460	GTP-binding protein SAR1 - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: intracellular protein transport (GO:0006886) ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U216481	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer