Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571718 in the current build, Tomato 200607 #2

Unigene SGN-U316920

Unigene Basic Information

Unigene ID:	SGN-U316920
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316920
mRNA sequence:	Length: 1938 bp

>SGN-U316920 Tomato 200607 #1 (18 members)
GTTTAATGGGTTCTGGGTGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTT
GAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAAT
GTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATC
TAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAA
GGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGC
TTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACT
GTACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTA
TGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGCCAGAGAACCTGCTTCTTACTTC
AGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGATGA
CAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGAAATGATCTTTGGGC
ACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAG
AGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGATGTTGATCCTAGCAGAAGACCTGGTGC
TGGACCTGATGGTTATGCTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCT
TGCCATGGAGCCAAAAGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGT
TAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTC
AAAATGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCA
GCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAA
CGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACACCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGC
ACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAAC
GGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTT
TCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAA
GAACTTGATGAGCTGATTTTATCAGCTATTTTGCTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pdk1	3-phosphoinositide-dependent protein kinase-1	protein kinase

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	11
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (18)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	132620	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U215762	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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