Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U565984 in the current build, Tomato 200607 #2

Unigene SGN-U316929

Unigene Basic Information

Unigene ID:	SGN-U316929
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316929
mRNA sequence:	Length: 2437 bp

>SGN-U316929 Tomato 200607 #1 (18 members)
GCACGAGGTTTCTGCAATCATTTCTCACATTTTCTTCACAACATCTTCAAAATTCTCTAAAATTTCTACCAAAAATTCTATACAATTTCT
TCAAATTTGGTAGAACTTTTTTGTTTGTACATTTTTTTGTTAGATCGAATTTTAAGCTTCAGATAATACTTTTGTGGACGGTTTTTGTTG
CTCCAATTAGTATTATTCTTTAGGGTTTTTGTTTTGAGATCCGGTTTATTTATTGGTTATGAATCCCAGAGGAAGATATCCACCGCCGGG
AATGGGAAGCGGCGGCGGAGGCGGCGGACGCGGGGGCGGAAACATGTACCCTAACGCTAACCCTAATTTTCAACCGAGAAATCCACAGCA
GTATGTGCAGAGAGGTCCGGTGAACCAGCAGCAGCAGTTTCAGAACCAACAGGCACAGCAATGGCTCAGAAGGAACCAGTTGGCATCTGA
TTCTACGGTTGATGAGGTTGAAAAGACGGTACAATCTGAAGCAGTTGATCAAAGTTCACAAGACTGGAAGGCGAGGTTGAAGATACCACC
AGCGGATACTAGATACAGGACAGAGGATGTGACAGCGACCAAGGGAAATGAATTTGAAGACTATTTTCTTAAGCGTGAATTGCTTATGGG
AATTTATGAAAAGGGTTTTGAAAGACCATCTCCAATCCAGGAAGAGAGTATCCCAATTGCTCTTACTGGGAGTGATATTTTGGCGAGGGC
CAAAAATGGAACAGGGAAAACTGCTGCCTTCTGCATTCCGGCATTGGAAAAAATTGACCAGGACGTCAATGCCATTCAAGTTGTTATCCT
TGTTCCTACGCGAGAATTGGCTCTTCAAACATCTCAAGTTTGCAAAGAACTTGGGAAGCACTTAAAAATTGAAGTCATGGTTACCACTGG
GGGGACCAGCTTGAAGGATGATATAATGCGACTCTATCAACCGGTACATTTACTAGTTGGAACCCCTGGAAGAATACTCGACCTTGCGAG
AAAGGGAATATGTGTTTTGAAAGATTGTTCCATGCTTGTCATGGATGAGGCTGATAAGCTTCTTTCTCCGGAGTTTCAACCTTCCATCGT
GCAGCTGATTCGTTTCTTGCCAGCAAATCGTCAAGTTTTAATGTTCTCAGCTACATTCCCTGTCACAGTCAAGGACTTTAAAGAAAGATA
CTTGCAGAAGCCATATGTTATCAACCTTATGGATGAACTTACTCTCAAGGGTATAACTCAATTTTATGCCTTCGTAGAGGAAAGGCAGAA
GCTTCATTGCCTTAACACTTTATTCTCAAAGCTTCAAATCAACCAATCAATTATCTTTTGCAACTCTGTAAACCGTGTGGAACTGCTTGC
CAAGAAGATCACAGAATTAGGCTATTCATGCTTCTACATCCATGCAAAGATGCTTCAAGATCATAGGAACAGAGTATTTCATGACTTCCG
TAATGGTGCCTGCAGGAACCTTGTTTGTACTGATCTGTTTACTAGAGGGATAGATATTCAAGCAGTCAATGTTGTTATAAATTTTGATTT
CCCGAAGAACTCAGAGACATATTTACACAGGGTTGGGCGATCAGGGAGATTTGGGCATCTTGGTTTAGCTGTGAACCTGATTACTTATGA
GGATCGCTTCAACCTGTACAGAATTGAACAAGAACTAGGAACAGAGATCAAGCAAATTCCTCCGCACATAGATCAGGCTATATATTGCCT
TTGATCAGTTAGCTGCTCGGTTATGGTGCACCAATGGTGAGTCTTTTGTACAGAAATCTCATGTTGAAGTTGTGCGATGCCTGTGATGCT
GAGATAATGGATGACTTGGCTGTTTCATGGTTGCCGAGATAACTGAGTTCATCTTTAGTTCTAGTGACGAGTTTTAAGTTAATCCTAAAA
GACTTTAGCAGTACATACTGACAATGGATAGGTCCAGTCAGAGACTGACCGTTGGTGAGTCCCCTGGTTAATGTAGTATTTGGCATTTGT
CGCTGTTTCCTTTTCGGTTTATGTCTGTTGGATAAGATGTACAAGGTTTTGCTCTATGGTATTCATCTGCGGCATATGGTGATGTGGGAG
AATTGGTCATGGAGAAGTGATACCTAAAGATGTTAAGTGACGGAGTAGTCATTTTTGTGCACTCATAGAGATTAATATCAGACGTTTCAA
CCAGTGTCTCAGTATGTGTACCAGAAGCATTGTACTCCTTTCAGCTCTTATAGCTTTTTTCCTGTTATGTTGGTGTTTGGAATGATGAAG
CAGGTTGTGTCTGCATGAATGTGAAGAGTATGGTTTTAATTTTATCTATTCTGGATTTGAATAAAAAAAAAAAAAAAAAAAAAACTAAAG
GGGGGGCCAAAAAAAAAAATTCCCCGGGGGGGGGGCGGGACCCCATTTCCCCGGAGGGGGGTTTAAAAAAAATTCCGGGGGCGGTTTTTT
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (18)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	129042	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	54

Preceding Unigenes (2)

Unigene	Build
SGN-U215980	Lycopersicon Combined #3
SGN-U230407	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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