Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U563022 in the current build, Tomato 200607 #2

Unigene SGN-U316934

Unigene Basic Information

Unigene ID:	SGN-U316934
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316934
mRNA sequence:	Length: 1873 bp

>SGN-U316934 Tomato 200607 #1 (24 members)
CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACAT
ATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTT
TGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTC
AAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTT
TCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCT
CCTGATGAAGTTGCTCTCTCCAAATTCCTGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATT
GTTTCGCAGAGTGAAGTTGCAGCTCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATT
GGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTTATTCAGATGAATATTGAT
GAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTC
GACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGA
TTTCTTGCTGTTATCTGCAAACAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCG
AATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACC
TTTGTCGGCACATACAACTATATGTCTCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTC
TTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATA
GTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATGTGTCCAGAAGCACCAGAAG
GACAGACTGTCGGCAAATGATCTCATGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCC
GCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCA
GTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTC
CGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGAC
TTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAG
TGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
SlMAPKK1	MAP kinase kinase 1	Mitogen-activated protein kinase

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 3 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	130517	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	10

Preceding Unigenes (2)

Unigene	Build
SGN-U216095	Lycopersicon Combined #3
SGN-U233444	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
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Event Web URL:

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