Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571014 in the current build, Tomato 200607 #2

Unigene SGN-U316944

Unigene Basic Information

Unigene ID:	SGN-U316944
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316944
mRNA sequence:	Length: 1647 bp

>SGN-U316944 Tomato 200607 #1 (21 members)
CTTGGTTTTTTCTTCTTTCTTCTCCGGCGTCTCTTCACTTCTCTCTGCGTAATTTTTCTGCGTTTCTTCTCTGCGATTCTCGTTACTGTC
ATAATAGAACCCTCTGTGGAGAAGTCTTGGATCTGCGGCTAAATGGATGAATCCAAAGAAGAAACGAAGTCTTTCAAAGAATTAGGAGTT
TGTGATCAATTGATTGAGGCTTGTGATAATTTGGGTTGGAAAAACCCTTCTAAGATACAAGCTGAAGCTATGCCTCATGCCTTTGAAGGC
AAAGACCTAATTGGTCTGGCACAAACGGGTTCTGGAAAGACGGGAGCTTTTGCAATTCCTATACTGCAATCCTTATTAGATTCTCCGCAT
GCCTTTTTTGCCTGTGTTCTCTCTCCAACAAGAGAGCTCGCCATTCAAATTGCTGAACAGTTTGAAGCTTTAGGATCCGGTATTGGAGTA
AAATGTGCAGTGCTGGTTGGAGGGATAGATCAAGTACAACAGAGCATTGCCCTCGGGAAACGACCTCACATTGTTGTTGCAACACCTGGT
CGCCTCTTGGATCATCTTTCCAATACCAAAGGGTTTTCTCTCCGTACGATAAAGTACTTGGTATTAGATGAGGCGGACAGGTTGCTAAAT
GAGGATTTTGAGAAGGCCCTCGATCAGATTTTGAATGCTATTCCCCATGAACGAAGGACTTATCTCTTTTCTGCTACAATGACCAAAAAG
GTGCGGAAACTTCAGAGGGCTTGTTTGAGAAATCCTGTTAAGATTGAAGCTGCATCTAAATATTCCACCGTTGATACACTGAAGCAGCAG
TATCGTTTTCTTCCTGCTAAATATAAGGACTGCTATCTTATCTATATTCTGACTGAGATGTCTGGCAGTACATCTATGGTTTTCACTCGC
ACATGTGATGCAACTCGTCTTCTGGCTTTGATGCTTCGCAACCTAGGCTTGAGAGCCATACCAATTAGTGGTCAGATGACTCAGGATAAA
AGGCTTGGAGCTCTAAACAAATTTAAGGCCGGAGAGTGCAATATCCTTATATGCACTGATGTGGCCAGTCGAGGACTTGATATACCGTCT
GTTGATATGGTTATCAACTATGATATTCCAACAAACTCAAAGGATTATATACATAGAGTGGGAAGAACTGCACGAGCAGGACGTTCCGGG
GTTGCCATATCATTAGTAAATCAGTATGAGTTGGAGTGGTATATACAGATAGAAAAGCTTATTGGGAAGAAACTACCCGAGTATCCCGCA
GAGGAAGAGGAGGTTTTGCTACTCTTGGAGCGTGTCACAGAAGCCAAAAGGATCTCATTGATGAAAATCAAAGAAACTGGTGGGAAAAGG
AAACACAGAGGTGGTGGAGATGATGGTGACGATCAAGAGGTTCATAAATACTTGGGAGTTAATAAGAAGGGAAAACAATCAAAGAAGCCA
AAGAGAAAATGAGGGAATTAATGTGTAAACTAATTTAGCAATTGTTTAGTCCAATTTTGACTTGGTTATTTATTTTATTATTGTTTACTC
ATTTAGGGGACTAAATTTGACATTTCATGAATTTGTGTTTTTGTTGTCAATGATAATATTTTCTTATATATACGTATAAAAAAGTAATTG
ATACGCCAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	128963	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	106

Preceding Unigenes (1)

Unigene	Build
SGN-U215535	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
End Date:
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