Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U576317 and SGN-U576318 in the current build, Tomato 200607 #2

Unigene SGN-U317045

Unigene Basic Information

Unigene ID:	SGN-U317045
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317045
mRNA sequence:	Length: 2450 bp

>SGN-U317045 Tomato 200607 #1 (23 members)
GAGTAAAAGTGAGTGAGTGAGAGAGAGCAATGGAGATGTCAATGGCTTCTACAACTCCATGTTTCTCCCTCCCCAAGAAAACTTTTTGTA
TTTCCACTCCTCTCCTTAAGAAACAATTGTTTGGTACTACTTTGCCTGGTTGTTTATCTGCTAAACTACCCCTCAAACTCAACCCAATTC
ATACTTCTATAAAATGCGCTGTTTCTGAGGCTACTCAAGCTCCATCTGCCTTAGAGAAGAAGAGCCAATTGATGAGGAGAAGTGATATAC
GGAATATAGCAATTGTTGCACATGTTGATCATGGGAAGACTACATTGGTTGATTCAATGCTCAAACAAGCAAAGGTTTTTCGTGATAACC
AGTTTGTACAAGAAAGGATCATGGACTCCAACGATATAGAGCGTGAAAGGGGAATAACAATACTTAGCAAAAATACATCAATTACTTACA
AGGATACAAAAATCAACATAATTGACACTCCAGGGCACTCTGACTTTGGTGGTGAAGTAGAACGCATCCTCAATATGGTTGAAGGAGTTC
TCCTTGTGGTAGATTCTGTTGAGGGTCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTCTGGAGTTTGGCCATGCTGTAGTTGTTG
TAGTCAATAAAATTGATAGACCTTCTGCTCGTCCAGAGTTTGTTGTCAACTCTACGTTTGAGCTCTTCATTGAACTTAATGCCACCGATG
AACAGTGTGATTTTCAGGTAATATATGCCAGTGGTATCAAGGGAAAGGCAGGACTATCACCTGAAAATTTGGGTGAGGATCTTGGCTCAT
TATTTGAGGCCGTCATCAGATGTATTCCAGGGCCCAAGATTAATAAAGATGGTGCACTTCAAATGCTTGCTACAAATATTGAGTATGAAG
AACATAAAGGGCGCATAGCTATTGGACGTGTGCATGCTGGAAGTCTGCGCAGGGGAATGGATGTGAAGATATGTACATCTGAAGACGCAT
GCAGATTCGGCAGAGTAAGTGAGTTATTTGTGTATGAGAAATTCAGTAGAGTTCCTGCTGAAACTGTTGAAGCTGGAGATATTTGTGCGG
TGTGTGGCATTGATGATATTCAGATCGGAGAGACTATCGCTGACAAAAGCGATGGAAAACCATTACCTTCAATCAAGGTTGAAGAACCTA
CAGTGAAAATGTCATTTTCAGTCAATACATCCCCCTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTCGAAACCTAAGAGACCGGTTGT
ACCGTGAGCTGGAAAGAAATCTGGCAATGAAAGTTGAAGATGGTGAAACTGCAGATACGTTCATTGTCAGTGGACGTGGTACTTTGCATA
TTACCATCCTGATAGAGAACATGCGAAGGGAAGGATACGAGTTCATGGTGGGACCTCCTAAAGTGATAAATAAGAGAGTGAACGACAAGT
TGCTGGAACCTTATGAGATTGCTACTGTTGAGGTTCCTGAAGAACACATGGGGTCTGTGGTTGAACTTCTGGGGAAAAGGCGTGGTCAGA
TGTTTGATATGCAAGGGCTTGGGTCTGAAGGAACATCCTTCCTCAAATATAAAATACCTACCCGTGGTCTTCTTGGATTGAGGAATTCAA
TCTTGACAGCTTCTAGGGGCACAGCAATTCTCAACACAGTATTTGAGAGCTATGAATCATGGGCTGGTGATATTTCTACTCGCGATCTTG
GTTCACTGGTTGCATTTGAGGACGGAACAAGTACATCGTACGCACTCATGAGTTCTCAGGACAGAGGACAGTTGTTTATTGGCCCTGGAG
TTGATGTTTATAAAGGTCAAATAGTTGGTATTCACCAACGGTCAGGTGACCTTGCCCTGAATGTCTGCAAGAAAAAAGCTGCAACAAATG
TCCGTTCAAACAAAGAAGTAACAGTGGTTCTTGATACCCCACTAGATTTTAGTCTGGATGATTGCATAGAGTACATTCAAGAAGATGAGC
TTGTTGAAGTTACTCCATCAAGTATCCGGATGCTGAAAAACCCAAAGTCTGCCAAAAAAATGCGATGAGGGTTCACATAGGACGAGGCAA
AGAGATGTGATGAAGTATACATAGGACGAGACAATATACATGTTACCCAGCTCATCATTTCATTCAAAAGCCTCTCTCTTTTGGACAGTG
CATATAGGATCATTAGCATGTTGGTACTTTTAACATGTGAATTGAACTTTTCGTTAATGCAGAGCTATACTGCATTCAAAGCCTTAAATA
CAATAGGTTGAAACCTTTTGGTAGTTGGATTTGGTTAGGCATACAAAGGCGTGGTATATTTCTCACAATTTGTATAGATAATATAATAGA
GTGCAAAACAATTTGCAATATTTGGTATTGTAATAACTATTATAGCATTATCATATTCCATATTTTTGTGTAAGATGTGCTTAATGGGAA
AAAACAGATTTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	119997	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	11
5	132069	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412) GTP-binding protein TypA - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U217237	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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