Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U573861 and SGN-U573862 in the current build, Tomato 200607 #2

Unigene SGN-U317056

Unigene Basic Information

Unigene ID:	SGN-U317056
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317056
mRNA sequence:	Length: 1526 bp

>SGN-U317056 Tomato 200607 #1 (22 members)
TAACAAGTCCCATTCCATCGTTGAATCTGTAGTTGAAAAAACAAAGGATCAACAATGTCTTTCCCTCACATAATTCGCAGCGCCATTCGA
AGCACATCATCAAAGATTGCACTTTTAGCAAGATCAACGACCCCTTTCACTAATCGATCCTTTTGTTCAAGTTTTGAATCGGAGAAGAAT
AGTACAGCACCATCAGAGGCCTCTTACTACCATCTAAGTGGTGGTCCTTCTCATATGCGTGCTGCTGTGTTTTGGGAACCAGGCAAACCC
CTCACCTTTGAAGATTTCCATATGCCTCGACCTAAAGCTAATGAAGTTCTCATCAAAACTAAAGCTTGTGGGGTCTGCCACTCTGACCTG
CATGTAATAAAGGGTGAACTTCCATTCGCTAGCCCTTGTGTTGTGGGGCATGAGATAACTGGTGAAGTGGTTGAACACGGACAGCTCTCA
GACAGTAAAATCATTGAAAGGTTTCCTGTGGGATCTCAAGTTGTTGGAGCTTTCATCATGCCTTGTGGTAGCTGTTCTTTCTGCTCTAAG
GGTCAAGATGACTTATGTGAGGATTTCTTTGCTTACAACCGAGCGAAGGGAACCCTTTATGATGGGGAAACGCGACTGTTCCTCCGTAAT
AGTGGTAAGCCGGTGTATATGTATAGCATGGGAGGTCTAGCTGAATACTGTGTAGTTCCTGCACATGCATTGGCTGTTCTACCAAATTCA
TTACCATACACAGAATCCGCCATTTTAGGATGTGCAGTTTTTACTGCCTATGGGGCTATGGCTCATGCTGCTGAGGTGCGCCCAGGTGAT
GCTATTGCTGTGATTGGTATAGGAGGTGTTGGCTCAAGCTGTCTGCAAATAGCAAGAGCATTTGGGGCGTCAGAGATTATTGCTGTAGAT
GTTCAAGATGAGAAATTGCAGAAAGCTAAATTCCTTGGAGCCACTCATTGTGTAAATGCATCAAAGGTGGATGCAGTGAAGACAATCAAG
GACATCACGGGAGGCTCTGGTGTTGACGTAGCTGTTGAAGCTTTGGGAAGACCACAAACATTCTTACAATGTGTGCAAAGCGTTCGCGAT
GGAGGCAAAGCTGTGATGATTGGACTTACACTATCTGGTGTTAAGGGGGAGGTCGATATCAACCACCTAGTGCGACGACAGATAAAAGTA
ATTGGCTCCTATGGAGCCAGAGCAAGACAAGATCTCCCTAAGCTGATTAAACTAGCCGAGAGTGGCATATTCAATCTATCTGCTGCTGTT
TCAAGGACCTGCAAATTTGAAGACGCTCCACAGGCATACAAAGATCTTGATCAGGGAACCATTGCTGGACGCGCTGTTGTTGAAATAATG
TAAATTTGATACTTACATCACTCATTTTAACATTCATGTGAACTTCTATTTCTGGTGATCTACTAGCGCTAGCAAACGTTACTGTTGGCG
TTAAATGAAACAAAACTGTAAATATGTGTCGAAAGTAATAAAACTCATTTTGAAAAAAAAAAACCCAAGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118545	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	58
5	132130	Alcohol dehydrogenase GroES-like NAD-binding site Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	6

Preceding Unigenes (1)

Unigene	Build
SGN-U216214	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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