Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570886 in the current build, Tomato 200607 #2

Unigene SGN-U317194

Unigene Basic Information

Unigene ID:	SGN-U317194
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317194
mRNA sequence:	Length: 2622 bp

>SGN-U317194 Tomato 200607 #1 (23 members)
GACGCCGGAGCAAATTTCCACAGGGTTTAACCAAAAACCCTAAACCCCCCATGGCTCGATCAGCTAGATCCTCTACGACGCGCCTATTCT
ACACCCTATGTTCCTCAACCAAAAGGGCGCCGTTGACTTCTCAACACCCACCGCCAACCCCAGTCGCCGCCTTATTGGCCGGAAACTTCC
AGCTGCGCCACTACGCCGCCAGTAGTGCCACCGCTAGAGTGAGAGAGGAGAAAGATGCGGTATGGAGAGAGTCGCTCGAAAAAGTACGGA
ATATTGGGATTTCAGCTCATATTGACTCCGGTAAGACTACATTAACAGAGAGGGTATTGTTTTATACTGGCCGGATCCATGAGATCCATG
AAGTTAGGGGTAAAGATGGAGTTGGTGCAAAGATGGATTCCATGGATTTAGAAAGAGAAAAAGGGATCACTATACAGTCTGCTGCTACTT
ACTGCACTTGGAAGGACTACCAGGTGAACATAATAGACACACCAGGTCATGTTGATTTCACAATTGAGGTGGAAAGAGCCTTGCGTGTCC
TTGATGGAGCCATTCTTGTCCTTTGTAGTGTTGGTGGTGTGCAAAGTCAGTCTATCACTGTTGATAGGCAAATGAGAAGATATGAAGTCC
CAAGACTTGCTTTTATTAATAAACTTGATCGGATGGGGGCAGACCCTTGGAAAGTTCTTAACCAGAACTTCGCAAGAGCAAAGCTTCGGC
ATCACAGTGCTGCTGTGCAAGTTCCGATTGGGTTAGAAGATGACTTCAAGGGTCTTATTGATCTCGTGCAGTCAAAAGCTTACTATTTCC
ATGGTTCCAATGGTGAGAAGATTGTCGCAGAAGATATTCCTGCTGATATGGAAGCAATTGCTTCTGAGAAGCGGCGAGAGCTAATTGAAG
CAGTCTCTGAGGTTGATGATAAGCTTGCCGAATCATTTCTGAATGATGAGCCTATATCATCTGCTGATCTTGAGGCAGCCATAAGGAGAG
CGACAATAGCACGGAAGTTTGTTCCTTTTTTTATGGGTAGTGCTTTCAAGAACAAGGGAGTTCAAACACTTCTTGATGGCGTTCTCAGTT
ACTTGCCTTGTCCAGTTGAAGTTAGCAACTATGCTCTGGATCAAACAAAGGATGAAGAGAAGGTTACCTTAACCGGAAACCCTTCTGGCC
CTTTGGTTGCCCTGGCATTTAAATTAGAGGAAGGCCGTTTTGGTCAATTGACCTATTTAAGAATCTATGAAGGTGTCATCCGGAAGGGCG
ATTTTATAATCAACGTGAACACGGGAAAGAAGATTAAGATTCCTCGCTTGGTGAGAATGCATTCAAATGAGATGGAGGATATCCAAGAGG
CTCATGCTGGGCAGATAGTTGCTGTGTTTGGCGTAGATTGTGCATCAGGGGATACTTTTACTGATGGATCAGTCAAATACACTATGACTT
CTATGAATGTACCTGAACCAGTGATGTCATTAGCTGTTTCACCTGTTTCTAAAGATTCTGGTGGACAATTTTCAAAAGCTTTGAATCGTT
TTCAGAAGGAGGACCCTACATTCCGTGTGGGTTTAGATGCTGAGAGTGGTGAGACAATCATATCTGGCATGGGGGAGCTGCATCTGGACA
TATATGTTGAGCGCATCCGGAGAGAATATAAGGTTGAAGCTCAGGTTGGAAAGCCTCGTGTAAACTTCAGGGAAACCATCACTAAGCGAG
CAGATTTTGATTATCTACACAAGAAGCAAAGTGGTGGGCAAGGTCAATATGGTAGAGTAATTGGGTATGTTGAACCTCTTGAACCAGGGT
CAGGCAGTAAGTTTGAATTTGAGAACATGCTTGTGGGACAAACTATTCCGTCAAACTATGTCCCTGCAATTGAAAAGGGTTTCAGGGAGG
CTGCCAATTCGGGCTCTCTGATTGGTCATCCTGTTGAAAATATCCGTGTTGTTTTGACGGATGGTGCCTCACATAATGTTGATTCAAGTG
AACTTGCATTCAAATTAGCTTCTATTTATGCTTTTAGACAGTGTTATACTGCAGCCAAGCCTATAATTTTAGAACCTGTGATGCTGGTGG
ATATAAAAGTGCCAACAGAATTTCAGGGCACTGTTACTGGGGATATCAATAAGAGGAAAGGTGTCATAATCGGCAATGACCAGGAAGGAG
ATGACTCTGTAATTACTGCCAATGTTCCTCTCAACATGATGTTTGGGTACTCAACATCTCTTCGATCAATGACACAGGGGAAAGGTGAGT
TCACAATGGAATACAGAGAGCATGCCCCAGTTTCAGGAGATACACAAACGCAACTTGTTAACGCATACAAGGCCAGCAAAGAAAATTGAA
AAGATGGTGTGCCTTTGAAGCTCCTGCAACTACATCCTGTTTAATTATTTTTTTTTATGAATTTGTCTCCTTGGGTGGGAGCAATGTTGT
GAAATCCTTAGGACCAGAACTGGTCAGTCAATTTTGATATGCTGAATAAAACAGTAAAATTCCATAATGTATACAAATAATTGCTTATAT
ACATACATATAGGTTGTGTATTAAAAAAAATTGAGAGGTGTAATGATATGTAGAAAAGCAAAAAGCTAACCATCTTCCCACCCCAAAAAA
AAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P119975 (779 Aa)

DAGANFHXGLTKNPKPPMARSAXILYDAPILHPMFLNQKGAVDFSTPTANPVAALLAGNFQLRHYAASSATARVREEKDAVWRESLEKVR
NIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWKDYQVNIIDTPGHVDFTIEVERALRV
LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQNFARAKLRHHSAAVQVPIGLEDDFKGLIDLVQSKAYYF
HGSNGEKIVAEDIPADMEAIASEKRRELIEAVSEVDDKLAESFLNDEPISSADLEAAIRRATIARKFVPFFMGSAFKNKGVQTLLDGVLS
YLPCPVEVSNYALDQTKDEEKVTLTGNPSGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKIPRLVRMHSNEMEDIQE
AHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVSPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGETIISGMGELHLD
IYVERIRREYKVEAQVGKPRVNFRETITKRADFDYLHKKQSGGQGQYGRVIGYVEPLEPGSGSKFEFENMLVGQTIPSNYVPAIEKGFRE
AANSGSLIGHPVENIRVVLTDGASHNVDSSELAFKLASIYAFRQCYTAAKPIILEPVMLVDIKVPTEFQGTVTGDINKRKGVIIGNDQEG
DDSVITANVPLNMMFGYSTSLRSMTQGKGEFTMEYREHAPVSGDTQTQLVNAYKASKEN

SignalP predicts non-secretion with a score of 0.066

IPR000640 Elongation factor G, C-terminal
IPR005517 Elongation factor G, domain IV
IPR004540 Translation elongation factor G
IPR005225 Small GTP-binding protein domain
IPR000795 Protein synthesis factor, GTP-binding
IPR004161 Elongation factor Tu, domain 2
IPR001093 IMP dehydrogenase/GMP reductase

Prediction based on longest six frame method

>SGN-P246410 (778 Aa)

RRSKFPQGLTKNPKPPMARSARSSTTRLFYTLCSSTKRAPLTSQHPPPTPVAALLAGNFQLRHYAASSATARVREEKDAVWRESLEKVRN
IGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWKDYQVNIIDTPGHVDFTIEVERALRVL
DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQNFARAKLRHHSAAVQVPIGLEDDFKGLIDLVQSKAYYFH
GSNGEKIVAEDIPADMEAIASEKRRELIEAVSEVDDKLAESFLNDEPISSADLEAAIRRATIARKFVPFFMGSAFKNKGVQTLLDGVLSY
LPCPVEVSNYALDQTKDEEKVTLTGNPSGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKIPRLVRMHSNEMEDIQEA
HAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVSPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGETIISGMGELHLDI
YVERIRREYKVEAQVGKPRVNFRETITKRADFDYLHKKQSGGQGQYGRVIGYVEPLEPGSGSKFEFENMLVGQTIPSNYVPAIEKGFREA
ANSGSLIGHPVENIRVVLTDGASHNVDSSELAFKLASIYAFRQCYTAAKPIILEPVMLVDIKVPTEFQGTVTGDINKRKGVIIGNDQEGD
DSVITANVPLNMMFGYSTSLRSMTQGKGEFTMEYREHAPVSGDTQTQLVNAYKASKEN

SignalP predicts non-secretion with a score of 0.065

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	119664	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13
5	129999	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U216470	Lycopersicon Combined #3
SGN-U238588	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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