Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572123 in the current build, Tomato 200607 #2

Unigene SGN-U317247

Unigene Basic Information

Unigene ID:	SGN-U317247
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317247
mRNA sequence:	Length: 2480 bp

>SGN-U317247 Tomato 200607 #1 (22 members)
CTTATGTATCTCAGCCCTCTAAACAAACCACAAGCTATATGATCCAAAGAGCAGGCCAGGGATATGGAAGCTGATCAAGAAGAAAGTAGG
GACCCCCCTAGACTTAGAGTCAACAGATCGAAGAGAGATGATCTCCCTCGATCCTTATCTGCAGCTGATGGAAACAGAACAAGAGAAATG
GAAATCCGACGAATGAGCAGTCGTACTGGCTCTACTGGTCTCCATAGAAATGAAGATGCAAATCTTGAGGCTGCAAATGGTGTAGCAGCA
AAGAAAGGAATGATTCTACCATTTACTCCACTGGCAATGTCTTTCGAGGATGTGAGCTACTTTGTTGACATGCCACCTGAAATGAGGGAC
CAAGGAGTAACAGAGGACAGACTTCAATTGCTTCGCGAAGTGACTGGTGCATTTAGGCCAGGCGTATTGACAGCACTGATGGGAGTCAGT
GGAGCAGGAAAGACTACACTCATGGATGTTCTAGCTGGACGTAAGACTGGAGGCTACATTGAAGGTGATGTAAGAATATCCGGATTTCCA
AAGAATCAAGAAACATTTGCCAGAGTTTCAGGATATTGTGAACAAACTGATATACACTCACCTCAAGTAACTATCCACGAATCTTTGTTA
TTTTCGGCTTTCCTCCGGCTCCCAAAAGAAGTCAGAAAAGAAGATAAGATGGTTTTTGTGGATGAAGTAATGGATCTGGTTGAGCTAGAC
AATCTCAAGGATGCAATTGTAGGGCTACCAGGAGTTACTGGTTTGTCAACAGAACAAAGGAAAAGATTGACTATTGCAGTAGAGCTTGTT
GCAAATCCTTCAATTATTTTTATGGATGAACCGACTTCTGGTCTTGATGCAAGAGCAGCAGCTATTGTTATGAGAACTGTGAGAAACACA
GTGGACACAGGGAGAACTGTTGTCTGCACAATACATCAACCAAGTATCGATATATTTGAAGCATTTGATGAGCTGCTTCTTATGAAAAGA
GGCGGGCAAGTAATCTATGCAGGCCCATTAGGTCGACATTCTCAGAAAATTATTGATTATTTTGAGGCAATTCCAGGAGTTCAAAAAATT
AAAGAGAAGTATAATCCAGCTACCTGGATGCTAGAGGCCAGTTCAATTTCCTCAGAAACTCGACTAGGAATGGATTTTGCTGAATACTAC
AGATCATCTGCTTTGCATCAAAGAAACAAGGCTCTTGTCAATGATTTGAGCACACCTCCTCCTGGAGCCAAAGACCTCTACTTTACCACA
CAATATTCCCAGCCCACATGGGGCCAGTTCAAGTCCTGCTTCTGGAAACAATGGTGGACTTACTGGAGAAGTCCAGACTATAACCTTGTC
AGATTCTTCTTTAGTCTGGCTGCAGCACTAATGATAGGGACCATTTTCTGGAACATTGGCAGTAAAATAGTTACTAGCGGTGATCTAATG
ATAGTCATCGGGGCAATGTATGCAGCTGTACTGTTTGTTGGAATCAATAATTGTTCGACTGTACAGCCAATTGTAGCCGTTGAGAGAACC
GTCTTTTATAGAGAAAGGGCTGCTGGGATGTATTCAGCATTACCATATGCTATGGCACAGGTAATTGCAGAAATACCATACGTACTCATC
CAAACAACATACTATACTCTTATAGTGTACGCTATGATTGGCTTTGAGTGGACGGCGGCTAAATTCTTCTGGTTCTATTTTGTAACCTTC
TTCTCCTTCCTATACTGGACATACTATGGAATGATGACTGTTTCCATCACACCGAACCACCAAGTAGCTGCGATCTTTGCTGCAGCATTC
TATGCTCTCTTCAATCTTTTCTCTGGTTTCTTCATTCCCAGACCGAGAATTCCCAAGTGGTGGATATGGTATTACTGGATCTGTCCAGTT
GCATGGACTGTTTATGGTTGCATTGTATCACAGTATGGTGATGTGGAGGCTACTATCAAAGTCCCAAATATGGCTCGAGACCCTATGATT
AAGGACTACATTAAAGATCATTTCGGATACAATCCAGACTTCATGGGACCAGTTGCTGTAGTTTTGGTTGGTTTTGCAGTCTTTTTCGCC
TTTATGTACTCTTACGCTATTAAGACATTGAACTTCCAAACAAGATAGGTAGATATGGATAGTTACAAAAGCTTGTACATATTGCCTGAA
GCTTCCTCTTTTCTTCACAAAAGAATGTGGCAATTGTTTATATAGTATTATCTTTAAAAGACATAAAAAGGGTCACACACCTCTAGGTTT
AGGATCTTTAGTATGTGTTTGTATTTAGGAGTTTTGCAGATAACTATTTTTATAGCACTGAGGAATATTCATTCTTGTAAAAGTCATATG
TAGTCTCCTCAGAATAGCACAAAAATGTTAGCAATAACTCTGCTTCCCCAGTGGCAAAATGTAATTGTAAATTACTGATGCTTATATGCA
ATTCAGATTATTTTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118465	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	113
5	129053	ABC-2 type transporter ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	51

Preceding Unigenes (1)

Unigene	Build
SGN-U216449	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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