Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U568979 in the current build, Tomato 200607 #2

Unigene SGN-U317373

Unigene Basic Information

Unigene ID:	SGN-U317373
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317373
mRNA sequence:	Length: 1404 bp

>SGN-U317373 Tomato 200607 #1 (14 members)
TTCATTCAATACCTTACAACTTAGATATTTTTCTCCATGTAAGCTCTTCAATATTGTTTTTATCGTAACTGATAAAATTATTGTTATATA
TGAGTCTTTTTTAGAAATATAAAATAAGATTGTGTTAGATTTGTTATATAGCGTGAAATGAATTAATGAGTTTCGTAAAAATGCAGGCAA
GACTGTGTTAGATTTAGAGTTTTAGTATATGGGGTTGTCTTTTCTTATGTGTGGTATGTTAAATTCTATGTGCTATTTCTATGGTTATTT
TTTTGTTTATTGATGATTTGTTTGTTCTTATTTTGTGTATTTTTCTGAAGCTGAAGTTCCCAATTATACTAGTTGACACATGGGATTGAG
ATTGGGGTTAATCTTTGTTGATAAAGTTAGAGTCTTTAAGCCAAAACAAGTTGAATCAGTATGGAATCACAACTGGGTTTAATTGAAAAA
TCATTTAATGTTAAATACTCAGATGGGGTTAGAGAAGCTCTTGATGAATTGCCTGATAGTTTTACAATTACTGATCCCTCTATTTCTGGT
CACCCTATTGTTTATGTATCAAGGGGTTTCTTGAAAGTATTTGGTTATTCAAAGAATGAGGTTTTAGGGAAGAATGGAAGGGTATTTCAA
GGGCCTAAGACTAATAGAAGATCAGTTATGGCGATTCGAGAGGCGATTCGTGAGGAGAGGGGTATACAGATTAGTTTGTTGAATTATAGG
AAGGATGGGACACCCTTTTGGATGTTGTTTAATATGTGTCCTGTTTATAGTGAGAAGGATGGGAGGGTGGTTCATTTTTTGGGAATTCAA
GTGCCTATTTTGAGGAGGAGAAATTCACTAGGTGGTGGAATTGGGAGAAATGGAGGAGTATGTTATGATGGAGGTAATTGCAGGGGGTAT
GTCTATAAGTGTTGTAGGAGGGAGGTTTGCTCGAATTCGATGATGGAAATGGACAGAGCGTTATCGGTTGATTCAGTTTCGGGGTTGGAC
CATACAGAAGTAGATGTTGAAGGACCTTGTGAAGCAAGTGATCAAGAGAAGACAAAAGCCAGTGTTGCTGTCAACAACATAATGTCCGTG
TTGGCAAACTACAGTGAGTTGAATGGCAGACTGGTCATTGACAGGAGATGCTGTCAATCGGGAACGAGTCTGCTCAGTGCATCCTTAAAT
ATATCTTTTGGTAGAATAAAACAAAGCTTTGTATTAACTGACGCACACTTACCAGACATGCCAATTGTCTATGCAAGTGATGCCTTCCTA
AAATTAATAGGCTACTTGAGACATGAAGTATTGGGTCGTAATTGCCGGTTTTTAAGTGGGGAAGATACAGAGAGAGGCACACAATTTCAG
ATAAAACAATGCATCCAAAATGAACAACCGTGTACTGTACATATCTTAAATTAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	120374	PAS fold PAS - Molecular Function: signal transducer activity (GO:0004871) - Biological Process: signal transduction (GO:0007165) PAS-associated C-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160) PAC motif - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Biological Process: signal transduction (GO:0007165) PAS fold-3	9
5	131276	PAS fold PAS - Molecular Function: signal transducer activity (GO:0004871) - Biological Process: signal transduction (GO:0007165) PAS-associated C-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160) PAC motif - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Biological Process: signal transduction (GO:0007165) PAS fold-3	7

Preceding Unigenes (1)

Unigene	Build
SGN-U215680	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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